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Kristin Eckert
Department of Pathology and Laboratory Medicine and Department of Biochemistry and Molecular Biology
Prof. Eckert is focused on mechanisms of human cell mutagenesis and repetitive DNA replication in relation to genome evolution.
Interests
Genome evolution
Molecular mechanisms of carcinogenesis
Education
Ph.D. in Oncology
University of Wisconsin-Madison
B.S. in Microbiology
Penn State University
Publications
S Hile
,
M Weissensteiner
,
K Pytko
,
J Dahl
,
E Kejnovský
,
I Kejnovská
,
M Hedglin
,
I Georgakopoulos-Soares
,
KD Makova
,
K Eckert
(2025).
Replicative DNA polymerase Epsilon and Delta holoenzymes show wide ranging inhibition at G-Quadruplexes in the human genome
.
NUCLEIC ACIDS RES
.
Paper Link
Non-B DNA & Microsatellite
M Weissensteiner
,
MA Cremona
,
WM Guiblet
,
N Stoler
,
RS Harris
,
M Cechova
,
KA Eckert
,
F Chiaromonte
,
YF Huang
,
KD Makova
(2023).
Accurate sequencing of DNA motifs able to form alternative (non-B) structures
.
GENOME RES
.
Paper Link
Non-B DNA & Microsatellite
ME Stein
,
A Nusawardhana
,
M Weissensteiner
,
M Leed
,
S Zhang
,
E Kejnovský
,
I Kejnovská
,
KD Makova
,
KA Eckert
(2022).
Variation in G-quadruplex Sequence and Topology Differentially Impacts Human DNA Polymerase Fidelity
.
DNA REPAIR
.
Paper Link
Non-B DNA & Microsatellite
WM Guiblet
,
M DeGiorgio
,
X Cheng
,
F Chiaromonte
,
KA Eckert
,
YF Huang
,
KD Makova
(2021).
Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome
.
GENOME RES
.
Paper Link
Non-B DNA & Microsatellite
WM Guiblet
,
MA Cremona
,
RS Harris
,
D Chen
,
KA Eckert
,
F Chiaromonte
,
Y Huang
,
KD Makova
(2021).
Non-B DNA: A major contributor to small- and large-scale variation in nucleotide substitution frequencies across the genome
.
NUCLEIC ACIDS RES
.
Paper Link
Regional variation
Non-B DNA & Microsatellite
WM Guiblet
,
MA Cremona
,
M Cechova
,
RS Harris
,
I Kejnovská
,
E Kejnovský
,
KA Eckert
,
F Chiaromonte
,
KD Makova
(2018).
Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate
.
GENOME RES
.
Press Release
Paper Link
Regional variation
Non-B DNA & Microsatellite
A Fungtammasan
,
M Tomaszkiewicz
,
R Campos-Sánchez
,
KA Eckert
,
M DeGiorgio
,
KD Makova
(2016).
Reverse Transcription Errors and RNA–DNA Differences at Short Tandem Repeats
.
MOL BIOL EVOL
.
Paper Link
Non-B DNA & Microsatellite
A Fungtammasan
,
G Ananda
,
SE Hile
,
MS-W Su
,
C Sun
,
RS Harris
,
P Medvedev
,
KA Eckert
,
KD Makova
(2015).
Accurate typing of short tandem repeats from genome-wide sequencing data and its applications
.
GENOME RES
.
Paper Link
Non-B DNA & Microsatellite
G Ananda
,
SE Hile
,
A Breski
,
Y Wang
,
YD Kelkar
,
KD Makova
,
KA Eckert
(2014).
Microsatellite Interruptions Stabilize Primate Genomes and Exist as Population-Specific Single Nucleotide Polymorphisms within Individual Human Genomes
.
PLOS GENET
.
Paper Link
Non-B DNA & Microsatellite
BA Baptiste
,
G Ananda
,
N Strubczewski
,
A Lutzkanin
,
SJ Khoo
,
A Srikanth
,
N Kim
,
KD Makova
,
MM Krasilnikova
,
KA Eckert
(2013).
Mature Microsatellites: Mechanisms Underlying Dinucleotide Microsatellite Mutational Biases in Human Cells
.
G3-GENES GENOM GENET
.
Paper Link
Non-B DNA & Microsatellite
G Ananda
,
E Walsh
,
KD Jacob
,
MM Krasilnikova
,
KA Eckert
,
F Chiaromonte
,
KD Makova
(2013).
Distinct Mutational Behaviors Differentiate Short Tandem Repeats from Microsatellites in the Human Genome
.
GENOME BIOL EVOL
.
Paper Link
Non-B DNA & Microsatellite
A Fungtammasan
,
E Walsh
,
F Chiaromonte
,
KA Eckert
,
KD Makova
(2012).
A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?
.
GENOME RES
.
Paper Link
Non-B DNA & Microsatellite
Regional variation
YD Kelkar
,
KA Eckert
,
F Chiaromonte
,
KD Makova
(2011).
A matter of life or death: How microsatellites emerge in and vanish from the human genome
.
GENOME RES
.
Paper Link
Non-B DNA & Microsatellite
YD Kelkar
,
N Strubczewski
,
SE Hile
,
F Chiaromonte
,
KA Eckert
,
KD Makova
(2010).
What Is a Microsatellite: A Computational and Experimental Definition Based upon Repeat Mutational Behavior at A/T and GT/AC Repeats
.
GENOME BIOL EVOL
.
Paper Link
Non-B DNA & Microsatellite