Example 4: 

For this example we will illustrate analysis of low coverage sequence data from a population of individuals. Like many statistical analyses, the results depend on one's choices for various thresholds and other parameters. The parameter values chosen here were validated by comparing the results with results from higher coverage data for the same individuals.

This example builds a single sequential history, but it is organized into several parts according to the type of analysis being performed. These illustrate the following skills.

Part 1:  Population structure

Part 2:  Detecting selective sweeps