Bring in SNP data in gd_snp format from the Galaxy library
Find the coverage distribution of the sequence reads
Draw a phylogenetic tree using all the SNPs
Convert the gd_snp file and filter SNPs
Run an principal component analysis on the converted SNPs
Group the individuals using information from the tree and PCA
Prepare an input dataset without the outlier
Run the PCA with labels and no outlier
Graph the ancestry of the individuals
Note: This tutorial assumes some basic Galaxy skills are already known.
If this is your first time using Galaxy, doing an earlier
example first will help.