[{"info": "uploaded snp file", "peek": "Contig1_chr1_3211382_3211764\t129\tT\tC\t73.0\tchr1\t3211512\tT\t6\t0\t2\t45\t4\t0\t2\t39\t5\t0\t2\t42\t5\t0\t2\t42\t5\t0\t2\t42\t7\t0\t2\t48\t17\t0\t2\t78\t23\t0\t2\t96\t9\t0\t2\t54\t2\t0\t2\t33\t16\t0\t2\t75\t6\t0\t2\t45\t16\t0\t2\t75\t7\t0\t2\t48\t11\t0\t2\t60\t6\t0\t2\t45\t2\t0\t2\t33\t6\t0\t2\t45\t6\t0\t2\t45\t5\t0\t2\t42\t2\t0\t2\t33\t1\t0\t2\t30\t6\t0\t2\t45\t0\t0\t-1\t0\t26\t0\t2\t105\t43\t0\t2\t156\t46\t0\t2\t165\t0\t11\t0\t48\tY\t36\t0.139\t0\n\nContig1_chr1_3211382_3211764\t165\tC\tA\t999.0\tchr1\t3211548\tA\t2\t3\t1\t53\t3\t0\t2\t36\t2\t3\t1\t60\t5\t0\t2\t42\t2\t3\t1\t47\t3\t4\t1\t82\t16\t0\t2\t75\t26\t0\t2\t105\t13\t0\t2\t66\t2\t0\t2\t33\t16\t0\t2\t75\t2\t2\t1\t35\t20\t0\t2\t87\t10\t0\t2\t57\t8\t3\t1\t49\t2\t6\t1\t44\t3\t0\t2\t36\t0\t4\t0\t9\t5\t0\t2\t42\t0\t4\t0\t9\t1\t0\t2\t30\t1\t0\t2\t30\t0\t2\t0\t3\t0\t0\t-1\t0\t31\t0\t2\t120\t36\t0\t2\t135\t16\t18\t1\t228\t32\t0\t2\t123\tY\t36\t0.139\t0\n\nContig1_chr1_3211382_3211764\t238\tA\tC\t999.0\tchr1\t3211620\tA\t2\t3\t1\t62\t1\t0\t2\t30\t2\t4\t1\t63\t2\t0\t2\t33\t2\t3\t1\t50\t3\t2\t1\t31\t12\t0\t2\t63\t17\t0\t2\t78\t9\t0\t2\t54\t3\t0\t2\t36\t13\t0\t2\t66\t2\t6\t1\t56\t11\t0\t2\t60\t7\t0\t2\t48\t3\t1\t2\t2\t2\t6\t1\t49\t2\t0\t2\t33\t2\t2\t1\t33\t9\t0\t2\t54\t0\t1\t-1\t0\t1\t0\t2\t30\t2\t1\t1\t1\t2\t0\t2\t33\t1\t0\t2\t30\t28\t0\t2\t111\t27\t0\t2\t108\t5\t4\t1\t66\t44\t0\t2\t159\tN\t72\t0.139\t5\n\nContig1_chr1_3211382_3211764\t326\tG\tA\t11.2\tchr1\t3211718\tG\t1\t0\t2\t30\t2\t2\t1\t27\t2\t0\t2\t33\t0\t1\t2\t1\t0\t0\t-1\t0\t1\t2\t1\t12\t3\t2\t1\t28\t0\t3\t0\t6\t0\t2\t0\t3\t3\t2\t1\t30\t2\t0\t2\t33\t3\t0\t2\t36\t3\t0\t2\t36\t0\t1\t0\t0\t2\t1\t2\t2\t2\t2\t1\t19\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t1\t1\t1\t4\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t2\t0\t3\t7\t0\t2\t48\t6\t0\t2\t45\t5\t0\t2\t42\t5\t0\t2\t42\tN\t22\t0.701\t0\n\nContig1_chr1_3211382_3211764\t348\tC\tT\t5.84\tchr1\t3211740\tC\t1\t0\t2\t30\t4\t0\t2\t39\t3\t0\t2\t36\t1\t0\t2\t30\t0\t0\t-1\t0\t4\t0\t2\t39\t7\t0\t2\t48\t8\t0\t2\t51\t2\t0\t2\t33\t6\t0\t2\t45\t4\t0\t2\t39\t4\t0\t2\t39\t4\t0\t2\t39\t2\t0\t2\t33\t5\t0\t2\t42\t4\t0\t2\t39\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t3\t0\t2\t36\t0\t0\t-1\t0\t1\t0\t2\t30\t1\t0\t2\t30\t2\t0\t2\t33\t0\t8\t0\t21\t4\t0\t2\t39\t8\t0\t2\t51\t4\t0\t2\t39\tN\t22\t+99.\t1\n\nContig2_chr1_3211779_3212094\t27\tT\tC\t999.0\tchr1\t3211806\tT\t2\t0\t2\t33\t6\t0\t2\t45\t5\t0\t2\t42\t4\t0\t2\t39\t0\t0\t-1\t0\t5\t0\t2\t42\t7\t0\t2\t48\t4\t0\t2\t39\t2\t0\t2\t33\t2\t0\t2\t33\t5\t0\t2\t42\t3\t0\t2\t36\t2\t0\t2\t33\t2\t0\t2\t33\t3\t0\t2\t36\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t30\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t30\t1\t0\t2\t30\t1\t0\t2\t30\t9\t0\t2\t54\t11\t0\t2\t60\t10\t0\t2\t57\t0\t10\t0\t27\tY\t66\t+99.\t0\n", "update_time": "2013-06-16 04:33:09.745145", "name": "bear SNPs", "extension": "gd_snp", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/bear_SNPs.gd_snp", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-16 04:33:09.651670", "hid": 1, "parent_id": null, "annotation": null, "blurb": "12,023,192 lines", "metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "comment_metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "scaffold": 1, "pos": 2, "dbkey": "canFam2", "individuals": [["AK1", 9], ["AK2", 13], ["AK3", 17], ["AK4", 21], ["AK5", 25], ["PB1", 29], ["PB2", 33], ["PB3", 37], ["PB4", 41], ["PB5", 45], ["PB6", 49], ["PB7", 53], ["PB8", 57], ["PB9", 61], ["PB10", 65], ["PB11", 69], ["PB12", 73], ["PB13", 77], ["PB14", 81], ["PB15", 85], ["PB16", 89], ["PB17", 93], ["PB18", 97], ["ancient", 101], ["ABC1", 105], ["ABC2", 109], ["GRZ", 113], ["BLK", 117]], "ref": 6, "species": "bear"}, "comment_lines": "6", "pos": 2, "dbkey": "canFam2", "individual_columns": [9, 13, 17, 21, 25, 29, 33, 37, 41, 45, 49, 53, 57, 61, 65, 69, 73, 77, 81, 85, 89, 93, 97, 101, 105, 109, 113, 117], "individual_names": ["AK1", "AK2", "AK3", "AK4", "AK5", "PB1", "PB2", "PB3", "PB4", "PB5", "PB6", "PB7", "PB8", "PB9", "PB10", "PB11", "PB12", "PB13", "PB14", "PB15", "PB16", "PB17", "PB18", "ancient", "ABC1", "ABC2", "GRZ", "BLK"], "columns": 124, "scaffold": 1, "column_types": ["str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int"], "ref": 6, "species": "bear", "data_lines": 12023192}}, {"info": "uploaded gd_sap file", "peek": "chr1\t3254074\tENSCAFT00000000001\tENSCAFP00000000001\tA\t827\tA\t90.9\t155\t100856150\n\nchr1\t3255848\tENSCAFT00000000001\tENSCAFP00000000001\tS\t759\tA\t88.9\t119\t100856150\n\nchr1\t3261461\tENSCAFT00000000001\tENSCAFP00000000001\tY\t695\tY\t88.6\t121\t100856150\n\nchr1\t3261546\tENSCAFT00000000001\tENSCAFP00000000001\tS\t667\tF\t88.6\t121\t100856150\n\nchr1\t3266093\tENSCAFT00000000001\tENSCAFP00000000001\tN\t582\tD\t92.6\t144\t100856150\n\nchr1\t3266137\tENSCAFT00000000001\tENSCAFP00000000001\tA\t567\tV\t92.6\t144\t100856150\n", "update_time": "2013-06-16 04:33:09.846303", "name": "bear SAPs", "extension": "gd_sap", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/bear_SAPs.gd_sap", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-16 04:33:09.746788", "hid": 2, "parent_id": null, "annotation": null, "blurb": "79,454 lines", "metadata": {"rPos": 2, "column_names": ["ref", "rPos", "trns", "pep", "AA1", "loc", "AA2", "%ID", "ex", "KEGG"], "comment_metadata": {"rPos": 2, "column_names": ["ref", "rPos", "trns", "pep", "AA1", "loc", "AA2", "%ID", "ex", "KEGG"], "scaffold": 0, "pos": 0, "dbkey": "canFam2", "ref": 1, "species": "bear"}, "comment_lines": "1", "pos": 2, "dbkey": "canFam2", "kegg_gene": 1, "scaffold": 1, "columns": 10, "kegg_path": 1, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str"], "ref": 1, "species": "bear", "data_lines": 79454}}, {"info": "", "peek": "9\tAK1\t\n\n13\tAK2\t\n\n17\tAK3\t\n\n21\tAK4\t\n\n25\tAK5\t\n\n29\tPB1\t\n", "update_time": "2013-06-16 04:33:10.051664", "name": "polar", "extension": "gd_indivs", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/polar.gd_indivs", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-16 04:33:09.948117", "hid": 4, "parent_id": null, "annotation": null, "blurb": "24 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 24, "column_types": ["int", "str", "str"], "columns": 3}}, {"info": "", "peek": "105\tABC1\t\n\n109\tABC2\t\n\n113\tGRZ\t\n\n\n\n", "update_time": "2013-06-16 04:33:10.161209", "name": "ABC-GRZ", "extension": "gd_indivs", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/ABC-GRZ.gd_indivs", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-16 04:33:10.053028", "hid": 5, "parent_id": null, "annotation": null, "blurb": "3 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 3, "column_types": ["int", "str", "str"], "columns": 3}}, {"info": "", "peek": "117\tBLK\t\n\n\n\n\n\n", "update_time": "2013-06-16 04:33:10.267584", "name": "black", "extension": "gd_indivs", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/black.gd_indivs", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-16 04:33:10.162438", "hid": 6, "parent_id": null, "annotation": null, "blurb": "1 line", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 1, "column_types": ["int", "str", "str"], "columns": 3}}, {"info": "None", "peek": "Contig1_chr1_3211382_3211764\t165\tC\tA\t999.0\tchr1\t3211548\tA\t2\t3\t1\t53\t3\t0\t2\t36\t2\t3\t1\t60\t5\t0\t2\t42\t2\t3\t1\t47\t3\t4\t1\t82\t16\t0\t2\t75\t26\t0\t2\t105\t13\t0\t2\t66\t2\t0\t2\t33\t16\t0\t2\t75\t2\t2\t1\t35\t20\t0\t2\t87\t10\t0\t2\t57\t8\t3\t1\t49\t2\t6\t1\t44\t3\t0\t2\t36\t0\t4\t0\t9\t5\t0\t2\t42\t0\t4\t0\t9\t1\t0\t2\t30\t1\t0\t2\t30\t0\t2\t0\t3\t0\t0\t-1\t0\t31\t0\t2\t120\t36\t0\t2\t135\t16\t18\t1\t228\t32\t0\t2\t123\tY\t36\t0.139\t0\t0.0004\t142\t34\t1\t105\n\nContig1_chr1_3211382_3211764\t238\tA\tC\t999.0\tchr1\t3211620\tA\t2\t3\t1\t62\t1\t0\t2\t30\t2\t4\t1\t63\t2\t0\t2\t33\t2\t3\t1\t50\t3\t2\t1\t31\t12\t0\t2\t63\t17\t0\t2\t78\t9\t0\t2\t54\t3\t0\t2\t36\t13\t0\t2\t66\t2\t6\t1\t56\t11\t0\t2\t60\t7\t0\t2\t48\t3\t1\t2\t2\t2\t6\t1\t49\t2\t0\t2\t33\t2\t2\t1\t33\t9\t0\t2\t54\t0\t1\t-1\t0\t1\t0\t2\t30\t2\t1\t1\t1\t2\t0\t2\t33\t1\t0\t2\t30\t28\t0\t2\t111\t27\t0\t2\t108\t5\t4\t1\t66\t44\t0\t2\t159\tN\t72\t0.139\t5\t0.0456\t110\t29\t1\t78\n\nContig1_chr1_3211382_3211764\t326\tG\tA\t11.2\tchr1\t3211718\tG\t1\t0\t2\t30\t2\t2\t1\t27\t2\t0\t2\t33\t0\t1\t2\t1\t0\t0\t-1\t0\t1\t2\t1\t12\t3\t2\t1\t28\t0\t3\t0\t6\t0\t2\t0\t3\t3\t2\t1\t30\t2\t0\t2\t33\t3\t0\t2\t36\t3\t0\t2\t36\t0\t1\t0\t0\t2\t1\t2\t2\t2\t2\t1\t19\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t1\t1\t1\t4\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t2\t0\t3\t7\t0\t2\t48\t6\t0\t2\t45\t5\t0\t2\t42\t5\t0\t2\t42\tN\t22\t0.701\t0\t0.2593\t30\t21\t1\t36\n\nContig1_chr1_3211382_3211764\t348\tC\tT\t5.84\tchr1\t3211740\tC\t1\t0\t2\t30\t4\t0\t2\t39\t3\t0\t2\t36\t1\t0\t2\t30\t0\t0\t-1\t0\t4\t0\t2\t39\t7\t0\t2\t48\t8\t0\t2\t51\t2\t0\t2\t33\t6\t0\t2\t45\t4\t0\t2\t39\t4\t0\t2\t39\t4\t0\t2\t39\t2\t0\t2\t33\t5\t0\t2\t42\t4\t0\t2\t39\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t3\t0\t2\t36\t0\t0\t-1\t0\t1\t0\t2\t30\t1\t0\t2\t30\t2\t0\t2\t33\t0\t8\t0\t21\t4\t0\t2\t39\t8\t0\t2\t51\t4\t0\t2\t39\tN\t22\t+99.\t1\t0.2500\t70\t0\t2\t51\n\nContig2_chr1_3211779_3212094\t141\tC\tG\t999.0\tchr1\t3211919\tC\t4\t0\t2\t39\t9\t0\t2\t54\t1\t0\t2\t30\t1\t3\t1\t23\t2\t0\t2\t33\t12\t0\t2\t63\t13\t5\t1\t15\t15\t0\t2\t72\t12\t0\t2\t63\t3\t1\t2\t16\t6\t8\t1\t79\t4\t6\t1\t69\t2\t6\t1\t51\t6\t6\t1\t42\t11\t0\t2\t60\t8\t0\t2\t51\t1\t3\t1\t26\t4\t0\t2\t39\t0\t3\t0\t6\t3\t0\t2\t36\t0\t0\t-1\t0\t1\t0\t2\t30\t2\t0\t2\t33\t2\t0\t2\t33\t25\t0\t2\t102\t29\t0\t2\t114\t15\t0\t2\t72\t35\t0\t2\t132\tY\t113\t0.479\t0\t0.1439\t122\t41\t1\t79\n\nContig2_chr1_3211779_3212094\t278\tG\tA\t117.0\tchr1\t3212055\tG\t0\t2\t0\t3\t1\t2\t2\t3\t3\t3\t1\t12\t4\t0\t2\t39\t0\t1\t2\t12\t9\t3\t2\t6\t16\t0\t2\t75\t9\t0\t2\t54\t6\t0\t2\t45\t1\t0\t2\t30\t13\t0\t2\t66\t1\t3\t1\t14\t12\t0\t2\t63\t9\t0\t2\t54\t3\t4\t1\t24\t5\t3\t1\t7\t2\t0\t2\t33\t0\t0\t-1\t0\t4\t0\t2\t39\t1\t1\t2\t12\t1\t0\t2\t30\t1\t2\t1\t3\t0\t0\t-1\t0\t0\t0\t-1\t0\t20\t0\t2\t87\t21\t0\t2\t90\t14\t9\t1\t56\t18\t0\t2\t81\tY\t136\t+99.\t0\t0.0048\t101\t24\t1\t75\n", "update_time": "2013-06-16 04:33:10.424835", "name": "c128 = Genotype Polar", "extension": "gd_snp", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/c128___Genotype_Polar.gd_snp", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-16 04:33:10.269178", "hid": 7, "parent_id": null, "annotation": null, "blurb": "7,659,722 lines", "metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "comment_metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "scaffold": 1, "pos": 2, "dbkey": "canFam2", "individuals": [["AK1", 9], ["AK2", 13], ["AK3", 17], ["AK4", 21], ["AK5", 25], ["PB1", 29], ["PB2", 33], ["PB3", 37], ["PB4", 41], ["PB5", 45], ["PB6", 49], ["PB7", 53], ["PB8", 57], ["PB9", 61], ["PB10", 65], ["PB11", 69], ["PB12", 73], ["PB13", 77], ["PB14", 81], ["PB15", 85], ["PB16", 89], ["PB17", 93], ["PB18", 97], ["ancient", 101], ["ABC1", 105], ["ABC2", 109], ["GRZ", 113], ["BLK", 117]], "ref": 6, "species": "bear"}, "comment_lines": null, "pos": 7, "dbkey": "canFam2", "individual_columns": [9, 13, 17, 21, 25, 29, 33, 37, 41, 45, 49, 53, 57, 61, 65, 69, 73, 77, 81, 85, 89, 93, 97, 101, 105, 109, 113, 117], "individual_names": ["AK1", "AK2", "AK3", "AK4", "AK5", "PB1", "PB2", "PB3", "PB4", "PB5", "PB6", "PB7", "PB8", "PB9", "PB10", "PB11", "PB12", "PB13", "PB14", "PB15", "PB16", "PB17", "PB18", "ancient", "ABC1", "ABC2", "GRZ", "BLK"], "columns": 129, "scaffold": 6, "column_types": ["str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int"], "ref": 6, "species": "bear", "data_lines": 7659722}}, {"info": "None", "peek": "Contig1_chr1_3211382_3211764\t165\tC\tA\t999.0\tchr1\t3211548\tA\t2\t3\t1\t53\t3\t0\t2\t36\t2\t3\t1\t60\t5\t0\t2\t42\t2\t3\t1\t47\t3\t4\t1\t82\t16\t0\t2\t75\t26\t0\t2\t105\t13\t0\t2\t66\t2\t0\t2\t33\t16\t0\t2\t75\t2\t2\t1\t35\t20\t0\t2\t87\t10\t0\t2\t57\t8\t3\t1\t49\t2\t6\t1\t44\t3\t0\t2\t36\t0\t4\t0\t9\t5\t0\t2\t42\t0\t4\t0\t9\t1\t0\t2\t30\t1\t0\t2\t30\t0\t2\t0\t3\t0\t0\t-1\t0\t31\t0\t2\t120\t36\t0\t2\t135\t16\t18\t1\t228\t32\t0\t2\t123\tY\t36\t0.139\t0\t0.0004\t142\t34\t1\t105\t83\t18\t1\t228\n\nContig1_chr1_3211382_3211764\t238\tA\tC\t999.0\tchr1\t3211620\tA\t2\t3\t1\t62\t1\t0\t2\t30\t2\t4\t1\t63\t2\t0\t2\t33\t2\t3\t1\t50\t3\t2\t1\t31\t12\t0\t2\t63\t17\t0\t2\t78\t9\t0\t2\t54\t3\t0\t2\t36\t13\t0\t2\t66\t2\t6\t1\t56\t11\t0\t2\t60\t7\t0\t2\t48\t3\t1\t2\t2\t2\t6\t1\t49\t2\t0\t2\t33\t2\t2\t1\t33\t9\t0\t2\t54\t0\t1\t-1\t0\t1\t0\t2\t30\t2\t1\t1\t1\t2\t0\t2\t33\t1\t0\t2\t30\t28\t0\t2\t111\t27\t0\t2\t108\t5\t4\t1\t66\t44\t0\t2\t159\tN\t72\t0.139\t5\t0.0456\t110\t29\t1\t78\t60\t4\t1\t111\n\nContig1_chr1_3211382_3211764\t326\tG\tA\t11.2\tchr1\t3211718\tG\t1\t0\t2\t30\t2\t2\t1\t27\t2\t0\t2\t33\t0\t1\t2\t1\t0\t0\t-1\t0\t1\t2\t1\t12\t3\t2\t1\t28\t0\t3\t0\t6\t0\t2\t0\t3\t3\t2\t1\t30\t2\t0\t2\t33\t3\t0\t2\t36\t3\t0\t2\t36\t0\t1\t0\t0\t2\t1\t2\t2\t2\t2\t1\t19\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t1\t1\t1\t4\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t2\t0\t3\t7\t0\t2\t48\t6\t0\t2\t45\t5\t0\t2\t42\t5\t0\t2\t42\tN\t22\t0.701\t0\t0.2593\t30\t21\t1\t36\t18\t0\t2\t48\n\nContig1_chr1_3211382_3211764\t348\tC\tT\t5.84\tchr1\t3211740\tC\t1\t0\t2\t30\t4\t0\t2\t39\t3\t0\t2\t36\t1\t0\t2\t30\t0\t0\t-1\t0\t4\t0\t2\t39\t7\t0\t2\t48\t8\t0\t2\t51\t2\t0\t2\t33\t6\t0\t2\t45\t4\t0\t2\t39\t4\t0\t2\t39\t4\t0\t2\t39\t2\t0\t2\t33\t5\t0\t2\t42\t4\t0\t2\t39\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t3\t0\t2\t36\t0\t0\t-1\t0\t1\t0\t2\t30\t1\t0\t2\t30\t2\t0\t2\t33\t0\t8\t0\t21\t4\t0\t2\t39\t8\t0\t2\t51\t4\t0\t2\t39\tN\t22\t+99.\t1\t0.2500\t70\t0\t2\t51\t12\t8\t1\t51\n\nContig2_chr1_3211779_3212094\t141\tC\tG\t999.0\tchr1\t3211919\tC\t4\t0\t2\t39\t9\t0\t2\t54\t1\t0\t2\t30\t1\t3\t1\t23\t2\t0\t2\t33\t12\t0\t2\t63\t13\t5\t1\t15\t15\t0\t2\t72\t12\t0\t2\t63\t3\t1\t2\t16\t6\t8\t1\t79\t4\t6\t1\t69\t2\t6\t1\t51\t6\t6\t1\t42\t11\t0\t2\t60\t8\t0\t2\t51\t1\t3\t1\t26\t4\t0\t2\t39\t0\t3\t0\t6\t3\t0\t2\t36\t0\t0\t-1\t0\t1\t0\t2\t30\t2\t0\t2\t33\t2\t0\t2\t33\t25\t0\t2\t102\t29\t0\t2\t114\t15\t0\t2\t72\t35\t0\t2\t132\tY\t113\t0.479\t0\t0.1439\t122\t41\t1\t79\t69\t0\t2\t114\n\nContig2_chr1_3211779_3212094\t278\tG\tA\t117.0\tchr1\t3212055\tG\t0\t2\t0\t3\t1\t2\t2\t3\t3\t3\t1\t12\t4\t0\t2\t39\t0\t1\t2\t12\t9\t3\t2\t6\t16\t0\t2\t75\t9\t0\t2\t54\t6\t0\t2\t45\t1\t0\t2\t30\t13\t0\t2\t66\t1\t3\t1\t14\t12\t0\t2\t63\t9\t0\t2\t54\t3\t4\t1\t24\t5\t3\t1\t7\t2\t0\t2\t33\t0\t0\t-1\t0\t4\t0\t2\t39\t1\t1\t2\t12\t1\t0\t2\t30\t1\t2\t1\t3\t0\t0\t-1\t0\t0\t0\t-1\t0\t20\t0\t2\t87\t21\t0\t2\t90\t14\t9\t1\t56\t18\t0\t2\t81\tY\t136\t+99.\t0\t0.0048\t101\t24\t1\t75\t55\t9\t1\t90\n", "update_time": "2013-06-16 04:33:10.556324", "name": "c132 = Genotype ABC +GRZ", "extension": "gd_snp", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/c132___Genotype_ABC__GRZ.gd_snp", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-16 04:33:10.426413", "hid": 8, "parent_id": null, "annotation": null, "blurb": "7,659,722 lines", "metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "comment_metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "scaffold": 1, "pos": 2, "dbkey": "canFam2", "individuals": [["AK1", 9], ["AK2", 13], ["AK3", 17], ["AK4", 21], ["AK5", 25], ["PB1", 29], ["PB2", 33], ["PB3", 37], ["PB4", 41], ["PB5", 45], ["PB6", 49], ["PB7", 53], ["PB8", 57], ["PB9", 61], ["PB10", 65], ["PB11", 69], ["PB12", 73], ["PB13", 77], ["PB14", 81], ["PB15", 85], ["PB16", 89], ["PB17", 93], ["PB18", 97], ["ancient", 101], ["ABC1", 105], ["ABC2", 109], ["GRZ", 113], ["BLK", 117]], "ref": 6, "species": "bear"}, "comment_lines": null, "pos": 7, "dbkey": "canFam2", "individual_columns": [9, 13, 17, 21, 25, 29, 33, 37, 41, 45, 49, 53, 57, 61, 65, 69, 73, 77, 81, 85, 89, 93, 97, 101, 105, 109, 113, 117], "individual_names": ["AK1", "AK2", "AK3", "AK4", "AK5", "PB1", "PB2", "PB3", "PB4", "PB5", "PB6", "PB7", "PB8", "PB9", "PB10", "PB11", "PB12", "PB13", "PB14", "PB15", "PB16", "PB17", "PB18", "ancient", "ABC1", "ABC2", "GRZ", "BLK"], "columns": 133, "scaffold": 6, "column_types": ["str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int"], "ref": 6, "species": "bear", "data_lines": 7659722}}, {"info": "None", "peek": "Contig1_chr1_3211382_3211764\t165\tC\tA\t999.0\tchr1\t3211548\tA\t2\t3\t1\t53\t3\t0\t2\t36\t2\t3\t1\t60\t5\t0\t2\t42\t2\t3\t1\t47\t3\t4\t1\t82\t16\t0\t2\t75\t26\t0\t2\t105\t13\t0\t2\t66\t2\t0\t2\t33\t16\t0\t2\t75\t2\t2\t1\t35\t20\t0\t2\t87\t10\t0\t2\t57\t8\t3\t1\t49\t2\t6\t1\t44\t3\t0\t2\t36\t0\t4\t0\t9\t5\t0\t2\t42\t0\t4\t0\t9\t1\t0\t2\t30\t1\t0\t2\t30\t0\t2\t0\t3\t0\t0\t-1\t0\t31\t0\t2\t120\t36\t0\t2\t135\t16\t18\t1\t228\t32\t0\t2\t123\tY\t36\t0.139\t0\t0.0004\t142\t34\t1\t105\t83\t18\t1\t228\t32\t0\t2\t123\n\nContig1_chr1_3211382_3211764\t238\tA\tC\t999.0\tchr1\t3211620\tA\t2\t3\t1\t62\t1\t0\t2\t30\t2\t4\t1\t63\t2\t0\t2\t33\t2\t3\t1\t50\t3\t2\t1\t31\t12\t0\t2\t63\t17\t0\t2\t78\t9\t0\t2\t54\t3\t0\t2\t36\t13\t0\t2\t66\t2\t6\t1\t56\t11\t0\t2\t60\t7\t0\t2\t48\t3\t1\t2\t2\t2\t6\t1\t49\t2\t0\t2\t33\t2\t2\t1\t33\t9\t0\t2\t54\t0\t1\t-1\t0\t1\t0\t2\t30\t2\t1\t1\t1\t2\t0\t2\t33\t1\t0\t2\t30\t28\t0\t2\t111\t27\t0\t2\t108\t5\t4\t1\t66\t44\t0\t2\t159\tN\t72\t0.139\t5\t0.0456\t110\t29\t1\t78\t60\t4\t1\t111\t44\t0\t2\t159\n\nContig1_chr1_3211382_3211764\t326\tG\tA\t11.2\tchr1\t3211718\tG\t1\t0\t2\t30\t2\t2\t1\t27\t2\t0\t2\t33\t0\t1\t2\t1\t0\t0\t-1\t0\t1\t2\t1\t12\t3\t2\t1\t28\t0\t3\t0\t6\t0\t2\t0\t3\t3\t2\t1\t30\t2\t0\t2\t33\t3\t0\t2\t36\t3\t0\t2\t36\t0\t1\t0\t0\t2\t1\t2\t2\t2\t2\t1\t19\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t1\t1\t1\t4\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t2\t0\t3\t7\t0\t2\t48\t6\t0\t2\t45\t5\t0\t2\t42\t5\t0\t2\t42\tN\t22\t0.701\t0\t0.2593\t30\t21\t1\t36\t18\t0\t2\t48\t5\t0\t2\t42\n\nContig1_chr1_3211382_3211764\t348\tC\tT\t5.84\tchr1\t3211740\tC\t1\t0\t2\t30\t4\t0\t2\t39\t3\t0\t2\t36\t1\t0\t2\t30\t0\t0\t-1\t0\t4\t0\t2\t39\t7\t0\t2\t48\t8\t0\t2\t51\t2\t0\t2\t33\t6\t0\t2\t45\t4\t0\t2\t39\t4\t0\t2\t39\t4\t0\t2\t39\t2\t0\t2\t33\t5\t0\t2\t42\t4\t0\t2\t39\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t3\t0\t2\t36\t0\t0\t-1\t0\t1\t0\t2\t30\t1\t0\t2\t30\t2\t0\t2\t33\t0\t8\t0\t21\t4\t0\t2\t39\t8\t0\t2\t51\t4\t0\t2\t39\tN\t22\t+99.\t1\t0.2500\t70\t0\t2\t51\t12\t8\t1\t51\t4\t0\t2\t39\n\nContig2_chr1_3211779_3212094\t141\tC\tG\t999.0\tchr1\t3211919\tC\t4\t0\t2\t39\t9\t0\t2\t54\t1\t0\t2\t30\t1\t3\t1\t23\t2\t0\t2\t33\t12\t0\t2\t63\t13\t5\t1\t15\t15\t0\t2\t72\t12\t0\t2\t63\t3\t1\t2\t16\t6\t8\t1\t79\t4\t6\t1\t69\t2\t6\t1\t51\t6\t6\t1\t42\t11\t0\t2\t60\t8\t0\t2\t51\t1\t3\t1\t26\t4\t0\t2\t39\t0\t3\t0\t6\t3\t0\t2\t36\t0\t0\t-1\t0\t1\t0\t2\t30\t2\t0\t2\t33\t2\t0\t2\t33\t25\t0\t2\t102\t29\t0\t2\t114\t15\t0\t2\t72\t35\t0\t2\t132\tY\t113\t0.479\t0\t0.1439\t122\t41\t1\t79\t69\t0\t2\t114\t35\t0\t2\t132\n\nContig2_chr1_3211779_3212094\t278\tG\tA\t117.0\tchr1\t3212055\tG\t0\t2\t0\t3\t1\t2\t2\t3\t3\t3\t1\t12\t4\t0\t2\t39\t0\t1\t2\t12\t9\t3\t2\t6\t16\t0\t2\t75\t9\t0\t2\t54\t6\t0\t2\t45\t1\t0\t2\t30\t13\t0\t2\t66\t1\t3\t1\t14\t12\t0\t2\t63\t9\t0\t2\t54\t3\t4\t1\t24\t5\t3\t1\t7\t2\t0\t2\t33\t0\t0\t-1\t0\t4\t0\t2\t39\t1\t1\t2\t12\t1\t0\t2\t30\t1\t2\t1\t3\t0\t0\t-1\t0\t0\t0\t-1\t0\t20\t0\t2\t87\t21\t0\t2\t90\t14\t9\t1\t56\t18\t0\t2\t81\tY\t136\t+99.\t0\t0.0048\t101\t24\t1\t75\t55\t9\t1\t90\t18\t0\t2\t81\n", "update_time": "2013-06-16 04:33:10.678711", "name": "c136 = Genotype black", "extension": "gd_snp", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/c136___Genotype_black.gd_snp", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-16 04:33:10.557562", "hid": 9, "parent_id": null, "annotation": null, "blurb": "7,659,722 lines", "metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "comment_metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "scaffold": 1, "pos": 2, "dbkey": "canFam2", "individuals": [["AK1", 9], ["AK2", 13], ["AK3", 17], ["AK4", 21], ["AK5", 25], ["PB1", 29], ["PB2", 33], ["PB3", 37], ["PB4", 41], ["PB5", 45], ["PB6", 49], ["PB7", 53], ["PB8", 57], ["PB9", 61], ["PB10", 65], ["PB11", 69], ["PB12", 73], ["PB13", 77], ["PB14", 81], ["PB15", 85], ["PB16", 89], ["PB17", 93], ["PB18", 97], ["ancient", 101], ["ABC1", 105], ["ABC2", 109], ["GRZ", 113], ["BLK", 117]], "ref": 6, "species": "bear"}, "comment_lines": null, "pos": 7, "dbkey": "canFam2", "individual_columns": [9, 13, 17, 21, 25, 29, 33, 37, 41, 45, 49, 53, 57, 61, 65, 69, 73, 77, 81, 85, 89, 93, 97, 101, 105, 109, 113, 117], "individual_names": ["AK1", "AK2", "AK3", "AK4", "AK5", "PB1", "PB2", "PB3", "PB4", "PB5", "PB6", "PB7", "PB8", "PB9", "PB10", "PB11", "PB12", "PB13", "PB14", "PB15", "PB16", "PB17", "PB18", "ancient", "ABC1", "ABC2", "GRZ", "BLK"], "columns": 137, "scaffold": 6, "column_types": ["str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int"], "ref": 6, "species": "bear", "data_lines": 7659722}}, {"info": "NoneFiltering with c136==0 or c136==2, \nkept 95.18% of 7659722 valid lines (7659722 total lines).\n", "peek": "Contig1_chr1_3211382_3211764\t165\tC\tA\t999.0\tchr1\t3211548\tA\t2\t3\t1\t53\t3\t0\t2\t36\t2\t3\t1\t60\t5\t0\t2\t42\t2\t3\t1\t47\t3\t4\t1\t82\t16\t0\t2\t75\t26\t0\t2\t105\t13\t0\t2\t66\t2\t0\t2\t33\t16\t0\t2\t75\t2\t2\t1\t35\t20\t0\t2\t87\t10\t0\t2\t57\t8\t3\t1\t49\t2\t6\t1\t44\t3\t0\t2\t36\t0\t4\t0\t9\t5\t0\t2\t42\t0\t4\t0\t9\t1\t0\t2\t30\t1\t0\t2\t30\t0\t2\t0\t3\t0\t0\t-1\t0\t31\t0\t2\t120\t36\t0\t2\t135\t16\t18\t1\t228\t32\t0\t2\t123\tY\t36\t0.139\t0\t0.0004\t142\t34\t1\t105\t83\t18\t1\t228\t32\t0\t2\t123\n\nContig1_chr1_3211382_3211764\t238\tA\tC\t999.0\tchr1\t3211620\tA\t2\t3\t1\t62\t1\t0\t2\t30\t2\t4\t1\t63\t2\t0\t2\t33\t2\t3\t1\t50\t3\t2\t1\t31\t12\t0\t2\t63\t17\t0\t2\t78\t9\t0\t2\t54\t3\t0\t2\t36\t13\t0\t2\t66\t2\t6\t1\t56\t11\t0\t2\t60\t7\t0\t2\t48\t3\t1\t2\t2\t2\t6\t1\t49\t2\t0\t2\t33\t2\t2\t1\t33\t9\t0\t2\t54\t0\t1\t-1\t0\t1\t0\t2\t30\t2\t1\t1\t1\t2\t0\t2\t33\t1\t0\t2\t30\t28\t0\t2\t111\t27\t0\t2\t108\t5\t4\t1\t66\t44\t0\t2\t159\tN\t72\t0.139\t5\t0.0456\t110\t29\t1\t78\t60\t4\t1\t111\t44\t0\t2\t159\n\nContig1_chr1_3211382_3211764\t326\tG\tA\t11.2\tchr1\t3211718\tG\t1\t0\t2\t30\t2\t2\t1\t27\t2\t0\t2\t33\t0\t1\t2\t1\t0\t0\t-1\t0\t1\t2\t1\t12\t3\t2\t1\t28\t0\t3\t0\t6\t0\t2\t0\t3\t3\t2\t1\t30\t2\t0\t2\t33\t3\t0\t2\t36\t3\t0\t2\t36\t0\t1\t0\t0\t2\t1\t2\t2\t2\t2\t1\t19\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t1\t1\t1\t4\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t2\t0\t3\t7\t0\t2\t48\t6\t0\t2\t45\t5\t0\t2\t42\t5\t0\t2\t42\tN\t22\t0.701\t0\t0.2593\t30\t21\t1\t36\t18\t0\t2\t48\t5\t0\t2\t42\n\nContig1_chr1_3211382_3211764\t348\tC\tT\t5.84\tchr1\t3211740\tC\t1\t0\t2\t30\t4\t0\t2\t39\t3\t0\t2\t36\t1\t0\t2\t30\t0\t0\t-1\t0\t4\t0\t2\t39\t7\t0\t2\t48\t8\t0\t2\t51\t2\t0\t2\t33\t6\t0\t2\t45\t4\t0\t2\t39\t4\t0\t2\t39\t4\t0\t2\t39\t2\t0\t2\t33\t5\t0\t2\t42\t4\t0\t2\t39\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t3\t0\t2\t36\t0\t0\t-1\t0\t1\t0\t2\t30\t1\t0\t2\t30\t2\t0\t2\t33\t0\t8\t0\t21\t4\t0\t2\t39\t8\t0\t2\t51\t4\t0\t2\t39\tN\t22\t+99.\t1\t0.2500\t70\t0\t2\t51\t12\t8\t1\t51\t4\t0\t2\t39\n\nContig2_chr1_3211779_3212094\t141\tC\tG\t999.0\tchr1\t3211919\tC\t4\t0\t2\t39\t9\t0\t2\t54\t1\t0\t2\t30\t1\t3\t1\t23\t2\t0\t2\t33\t12\t0\t2\t63\t13\t5\t1\t15\t15\t0\t2\t72\t12\t0\t2\t63\t3\t1\t2\t16\t6\t8\t1\t79\t4\t6\t1\t69\t2\t6\t1\t51\t6\t6\t1\t42\t11\t0\t2\t60\t8\t0\t2\t51\t1\t3\t1\t26\t4\t0\t2\t39\t0\t3\t0\t6\t3\t0\t2\t36\t0\t0\t-1\t0\t1\t0\t2\t30\t2\t0\t2\t33\t2\t0\t2\t33\t25\t0\t2\t102\t29\t0\t2\t114\t15\t0\t2\t72\t35\t0\t2\t132\tY\t113\t0.479\t0\t0.1439\t122\t41\t1\t79\t69\t0\t2\t114\t35\t0\t2\t132\n\nContig2_chr1_3211779_3212094\t278\tG\tA\t117.0\tchr1\t3212055\tG\t0\t2\t0\t3\t1\t2\t2\t3\t3\t3\t1\t12\t4\t0\t2\t39\t0\t1\t2\t12\t9\t3\t2\t6\t16\t0\t2\t75\t9\t0\t2\t54\t6\t0\t2\t45\t1\t0\t2\t30\t13\t0\t2\t66\t1\t3\t1\t14\t12\t0\t2\t63\t9\t0\t2\t54\t3\t4\t1\t24\t5\t3\t1\t7\t2\t0\t2\t33\t0\t0\t-1\t0\t4\t0\t2\t39\t1\t1\t2\t12\t1\t0\t2\t30\t1\t2\t1\t3\t0\t0\t-1\t0\t0\t0\t-1\t0\t20\t0\t2\t87\t21\t0\t2\t90\t14\t9\t1\t56\t18\t0\t2\t81\tY\t136\t+99.\t0\t0.0048\t101\t24\t1\t75\t55\t9\t1\t90\t18\t0\t2\t81\n", "update_time": "2013-06-16 04:33:10.794614", "name": "Black has an allele fixed", "extension": "gd_snp", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/Black_has_an_allele_fixed.gd_snp", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-16 04:33:10.680380", "hid": 10, "parent_id": null, "annotation": null, "blurb": "7,290,488 lines", "metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "comment_metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "scaffold": 1, "pos": 2, "dbkey": "canFam2", "individuals": [["AK1", 9], ["AK2", 13], ["AK3", 17], ["AK4", 21], ["AK5", 25], ["PB1", 29], ["PB2", 33], ["PB3", 37], ["PB4", 41], ["PB5", 45], ["PB6", 49], ["PB7", 53], ["PB8", 57], ["PB9", 61], ["PB10", 65], ["PB11", 69], ["PB12", 73], ["PB13", 77], ["PB14", 81], ["PB15", 85], ["PB16", 89], ["PB17", 93], ["PB18", 97], ["ancient", 101], ["ABC1", 105], ["ABC2", 109], ["GRZ", 113], ["BLK", 117]], "ref": 6, "species": "bear"}, "comment_lines": null, "pos": 7, "dbkey": "canFam2", "individual_columns": [9, 13, 17, 21, 25, 29, 33, 37, 41, 45, 49, 53, 57, 61, 65, 69, 73, 77, 81, 85, 89, 93, 97, 101, 105, 109, 113, 117], "individual_names": ["AK1", "AK2", "AK3", "AK4", "AK5", "PB1", "PB2", "PB3", "PB4", "PB5", "PB6", "PB7", "PB8", "PB9", "PB10", "PB11", "PB12", "PB13", "PB14", "PB15", "PB16", "PB17", "PB18", "ancient", "ABC1", "ABC2", "GRZ", "BLK"], "columns": 137, "scaffold": 6, "column_types": ["str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int"], "ref": 6, "species": "bear", "data_lines": 7290488}}, {"info": "NoneFiltering with c132!=1 and c132==c136 and c128!=c132, \r\nkept 27.07% of 7290488 valid lines (7290488 total lines).\r\n", "peek": "Contig1_chr1_3211382_3211764\t326\tG\tA\t11.2\tchr1\t3211718\tG\t1\t0\t2\t30\t2\t2\t1\t27\t2\t0\t2\t33\t0\t1\t2\t1\t0\t0\t-1\t0\t1\t2\t1\t12\t3\t2\t1\t28\t0\t3\t0\t6\t0\t2\t0\t3\t3\t2\t1\t30\t2\t0\t2\t33\t3\t0\t2\t36\t3\t0\t2\t36\t0\t1\t0\t0\t2\t1\t2\t2\t2\t2\t1\t19\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t1\t1\t1\t4\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t2\t0\t3\t7\t0\t2\t48\t6\t0\t2\t45\t5\t0\t2\t42\t5\t0\t2\t42\tN\t22\t0.701\t0\t0.2593\t30\t21\t1\t36\t18\t0\t2\t48\t5\t0\t2\t42\n\nContig2_chr1_3211779_3212094\t141\tC\tG\t999.0\tchr1\t3211919\tC\t4\t0\t2\t39\t9\t0\t2\t54\t1\t0\t2\t30\t1\t3\t1\t23\t2\t0\t2\t33\t12\t0\t2\t63\t13\t5\t1\t15\t15\t0\t2\t72\t12\t0\t2\t63\t3\t1\t2\t16\t6\t8\t1\t79\t4\t6\t1\t69\t2\t6\t1\t51\t6\t6\t1\t42\t11\t0\t2\t60\t8\t0\t2\t51\t1\t3\t1\t26\t4\t0\t2\t39\t0\t3\t0\t6\t3\t0\t2\t36\t0\t0\t-1\t0\t1\t0\t2\t30\t2\t0\t2\t33\t2\t0\t2\t33\t25\t0\t2\t102\t29\t0\t2\t114\t15\t0\t2\t72\t35\t0\t2\t132\tY\t113\t0.479\t0\t0.1439\t122\t41\t1\t79\t69\t0\t2\t114\t35\t0\t2\t132\n\nContig7_chr1_3222623_3222988\t154\tT\tA\t999.0\tchr1\t3222773\tT\t4\t5\t1\t36\t1\t0\t2\t30\t4\t0\t2\t39\t0\t0\t-1\t0\t4\t0\t2\t39\t7\t9\t1\t87\t10\t0\t2\t57\t8\t0\t2\t51\t12\t0\t2\t63\t2\t0\t2\t33\t14\t0\t2\t69\t11\t0\t2\t60\t4\t0\t2\t39\t12\t0\t2\t63\t7\t4\t1\t17\t4\t0\t2\t39\t1\t0\t2\t30\t2\t3\t1\t29\t3\t0\t2\t36\t0\t3\t0\t6\t1\t0\t2\t30\t1\t6\t1\t21\t1\t0\t2\t30\t3\t0\t2\t36\t34\t0\t2\t129\t44\t0\t2\t159\t35\t1\t2\t118\t35\t0\t2\t132\tY\t3\t0.067\t0\t0.1011\t116\t30\t1\t87\t113\t1\t2\t159\t35\t0\t2\t132\n\nContig14_chr1_3225817_3226192\t34\tC\tG\t111.0\tchr1\t3225851\tC\t1\t0\t2\t30\t0\t0\t-1\t0\t2\t0\t2\t33\t0\t0\t-1\t0\t2\t0\t2\t33\t4\t0\t2\t39\t2\t3\t1\t62\t5\t0\t2\t42\t1\t0\t2\t30\t1\t1\t1\t6\t3\t1\t2\t11\t1\t1\t1\t5\t8\t0\t2\t51\t1\t0\t2\t30\t5\t0\t2\t42\t1\t0\t2\t30\t2\t1\t1\t3\t2\t0\t2\t33\t3\t0\t2\t36\t2\t0\t2\t33\t1\t0\t2\t30\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t0\t-1\t0\t15\t0\t2\t72\t18\t0\t2\t81\t6\t0\t2\t45\t12\t0\t2\t63\tN\t23\t2.649\t1\t0.0680\t48\t7\t1\t62\t39\t0\t2\t81\t12\t0\t2\t63\n\nContig17_chr1_3242025_3243280\t947\tT\tC\t120.0\tchr1\t3242964\tT\t1\t3\t1\t30\t1\t0\t2\t30\t2\t1\t2\t9\t0\t0\t-1\t0\t2\t1\t1\t3\t1\t0\t2\t33\t7\t0\t2\t48\t3\t0\t2\t36\t3\t0\t2\t36\t3\t0\t2\t36\t10\t0\t2\t57\t2\t1\t1\t2\t5\t0\t2\t42\t1\t0\t2\t30\t4\t2\t1\t30\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t1\t2\t2\t5\t0\t2\t42\t0\t1\t0\t0\t2\t0\t2\t33\t0\t0\t-1\t0\t1\t1\t1\t4\t2\t0\t2\t33\t11\t0\t2\t60\t15\t0\t2\t72\t18\t0\t2\t81\t11\t0\t2\t60\tY\t6\t0.188\t0\t0.0853\t59\t11\t1\t57\t44\t0\t2\t81\t11\t0\t2\t60\n\nContig17_chr1_3242025_3243280\t953\tG\tA\t99.6\tchr1\t3242970\tT\t0\t4\t0\t9\t1\t0\t2\t30\t1\t1\t2\t2\t0\t0\t-1\t0\t2\t1\t2\t11\t1\t0\t2\t30\t7\t0\t2\t48\t3\t0\t2\t36\t3\t0\t2\t36\t3\t0\t2\t36\t6\t0\t2\t45\t2\t1\t2\t13\t4\t0\t2\t39\t1\t0\t2\t30\t4\t2\t1\t3\t1\t0\t2\t30\t0\t0\t-1\t0\t2\t1\t2\t10\t1\t0\t2\t30\t0\t1\t0\t0\t1\t0\t2\t30\t0\t0\t-1\t0\t1\t1\t2\t5\t2\t0\t2\t33\t5\t0\t2\t42\t12\t0\t2\t63\t11\t0\t2\t60\t9\t0\t2\t54\tY\t5\t0.188\t1\t0.1154\t46\t12\t1\t48\t28\t0\t2\t63\t9\t0\t2\t54\n", "update_time": "2013-06-17 04:36:51.210222", "name": "(Method 1) SNPs derived in polar", "extension": "gd_snp", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_SNPs_derived_in_polar.gd_snp", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:01:57.968567", "hid": 11, "parent_id": null, "annotation": "None", "blurb": "1,973,677 lines", "metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "comment_metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "scaffold": 1, "pos": 2, "dbkey": "canFam2", "individuals": [["AK1", 9], ["AK2", 13], ["AK3", 17], ["AK4", 21], ["AK5", 25], ["PB1", 29], ["PB2", 33], ["PB3", 37], ["PB4", 41], ["PB5", 45], ["PB6", 49], ["PB7", 53], ["PB8", 57], ["PB9", 61], ["PB10", 65], ["PB11", 69], ["PB12", 73], ["PB13", 77], ["PB14", 81], ["PB15", 85], ["PB16", 89], ["PB17", 93], ["PB18", 97], ["ancient", 101], ["ABC1", 105], ["ABC2", 109], ["GRZ", 113], ["BLK", 117]], "ref": 6, "species": "bear"}, "comment_lines": null, "pos": 7, "dbkey": "canFam2", "individual_columns": [9, 13, 17, 21, 25, 29, 33, 37, 41, 45, 49, 53, 57, 61, 65, 69, 73, 77, 81, 85, 89, 93, 97, 101, 105, 109, 113, 117], "individual_names": ["AK1", "AK2", "AK3", "AK4", "AK5", "PB1", "PB2", "PB3", "PB4", "PB5", "PB6", "PB7", "PB8", "PB9", "PB10", "PB11", "PB12", "PB13", "PB14", "PB15", "PB16", "PB17", "PB18", "ancient", "ABC1", "ABC2", "GRZ", "BLK"], "columns": 137, "scaffold": 6, "column_types": ["str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int"], "ref": 6, "species": "bear", "data_lines": 1973677}}, {"info": "NoneFiltering with c128!=1 and c128==c136 and c132!=c136, \r\nkept 49.02% of 7290488 valid lines (7290488 total lines).\r\n", "peek": "Contig1_chr1_3211382_3211764\t348\tC\tT\t5.84\tchr1\t3211740\tC\t1\t0\t2\t30\t4\t0\t2\t39\t3\t0\t2\t36\t1\t0\t2\t30\t0\t0\t-1\t0\t4\t0\t2\t39\t7\t0\t2\t48\t8\t0\t2\t51\t2\t0\t2\t33\t6\t0\t2\t45\t4\t0\t2\t39\t4\t0\t2\t39\t4\t0\t2\t39\t2\t0\t2\t33\t5\t0\t2\t42\t4\t0\t2\t39\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t3\t0\t2\t36\t0\t0\t-1\t0\t1\t0\t2\t30\t1\t0\t2\t30\t2\t0\t2\t33\t0\t8\t0\t21\t4\t0\t2\t39\t8\t0\t2\t51\t4\t0\t2\t39\tN\t22\t+99.\t1\t0.2500\t70\t0\t2\t51\t12\t8\t1\t51\t4\t0\t2\t39\n\nContig5_chr1_3215265_3215499\t57\tC\tT\t140.0\tchr1\t3215322\tT\t3\t0\t2\t36\t2\t0\t2\t33\t4\t0\t2\t39\t2\t0\t2\t33\t5\t0\t2\t42\t10\t0\t2\t57\t6\t0\t2\t45\t12\t0\t2\t63\t6\t0\t2\t45\t2\t0\t2\t33\t6\t0\t2\t45\t0\t0\t-1\t0\t9\t0\t2\t54\t10\t0\t2\t57\t9\t0\t2\t54\t2\t0\t2\t33\t1\t0\t2\t30\t3\t0\t2\t36\t1\t0\t2\t30\t3\t0\t2\t36\t3\t0\t2\t36\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t14\t0\t39\t33\t0\t2\t126\t10\t0\t2\t57\t23\t0\t2\t96\tN\t1\t0.672\t0\t0.1400\t99\t0\t2\t63\t43\t14\t1\t126\t23\t0\t2\t96\n\nContig6_chr1_3222307_3222559\t72\tG\tT\t18.7\tchr1\t3222378\tG\t2\t0\t2\t33\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t8\t0\t2\t51\t5\t0\t2\t42\t3\t0\t2\t36\t2\t0\t2\t33\t1\t0\t2\t30\t3\t0\t2\t36\t0\t0\t-1\t0\t6\t0\t2\t45\t2\t0\t2\t33\t4\t0\t2\t39\t1\t0\t2\t30\t1\t0\t2\t30\t0\t0\t-1\t0\t2\t0\t2\t33\t0\t0\t-1\t0\t2\t0\t2\t33\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t0\t-1\t0\t8\t0\t2\t51\t5\t5\t1\t55\t6\t0\t2\t45\t6\t0\t2\t45\tN\t43\t0.404\t0\t0.1163\t44\t0\t2\t51\t19\t5\t1\t55\t6\t0\t2\t45\n\nContig7_chr1_3222623_3222988\t157\tG\tT\t164.0\tchr1\t3222776\tC\t10\t0\t2\t57\t0\t0\t-1\t0\t4\t0\t2\t39\t0\t0\t-1\t0\t4\t0\t2\t39\t14\t0\t2\t69\t9\t0\t2\t54\t9\t0\t2\t54\t12\t0\t2\t63\t2\t0\t2\t33\t12\t0\t2\t63\t11\t0\t2\t60\t4\t0\t2\t39\t12\t0\t2\t63\t11\t0\t2\t60\t3\t0\t2\t36\t1\t0\t2\t30\t6\t0\t2\t45\t3\t0\t2\t36\t3\t0\t2\t36\t1\t0\t2\t30\t7\t0\t2\t48\t1\t0\t2\t30\t3\t0\t2\t36\t34\t0\t2\t129\t19\t23\t1\t228\t34\t0\t2\t129\t34\t0\t2\t129\tY\t3\t0.067\t0\t0.1168\t142\t0\t2\t69\t87\t23\t1\t228\t34\t0\t2\t129\n\nContig7_chr1_3222623_3222988\t235\tC\tA\t70.8\tchr1\t3222843\tC\t6\t0\t2\t45\t5\t0\t2\t42\t1\t0\t2\t30\t6\t0\t2\t45\t3\t0\t2\t36\t8\t0\t2\t51\t7\t0\t2\t48\t6\t0\t2\t45\t6\t0\t2\t45\t2\t0\t2\t33\t8\t0\t2\t51\t2\t0\t2\t33\t10\t0\t2\t57\t9\t0\t2\t54\t6\t0\t2\t45\t2\t0\t2\t33\t0\t0\t-1\t0\t2\t0\t2\t33\t1\t0\t2\t30\t0\t0\t-1\t0\t1\t0\t2\t30\t3\t0\t2\t36\t0\t0\t-1\t0\t0\t0\t-1\t0\t21\t0\t2\t90\t9\t16\t1\t105\t21\t0\t2\t60\t31\t0\t2\t120\tN\t5\t1.142\t1\t0.1356\t94\t0\t2\t57\t51\t16\t1\t105\t31\t0\t2\t120\n\nContig7_chr1_3222623_3222988\t373\tA\tC\t40.6\tchr1\t3222975\tA\t4\t0\t2\t39\t2\t0\t2\t33\t1\t0\t2\t30\t1\t0\t2\t30\t2\t0\t2\t33\t7\t0\t2\t48\t4\t0\t2\t39\t7\t0\t2\t48\t9\t0\t2\t54\t3\t0\t2\t36\t6\t0\t2\t45\t4\t0\t2\t39\t6\t0\t2\t45\t6\t0\t2\t45\t7\t0\t2\t48\t0\t0\t-1\t0\t0\t0\t-1\t0\t3\t0\t2\t36\t3\t0\t2\t36\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t30\t2\t0\t2\t33\t0\t0\t-1\t0\t16\t0\t2\t75\t5\t6\t1\t48\t6\t0\t2\t45\t9\t0\t2\t54\tY\t55\t+99.\t2\t0.1000\t78\t0\t2\t54\t27\t6\t1\t75\t9\t0\t2\t54\n", "update_time": "2013-06-17 04:36:24.760778", "name": "(Method 1) SNPs derived in ABC-GRZ", "extension": "gd_snp", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_SNPs_derived_in_ABC-GRZ.gd_snp", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:07:15.949789", "hid": 12, "parent_id": null, "annotation": "None", "blurb": "3,573,736 lines", "metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "comment_metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "scaffold": 1, "pos": 2, "dbkey": "canFam2", "individuals": [["AK1", 9], ["AK2", 13], ["AK3", 17], ["AK4", 21], ["AK5", 25], ["PB1", 29], ["PB2", 33], ["PB3", 37], ["PB4", 41], ["PB5", 45], ["PB6", 49], ["PB7", 53], ["PB8", 57], ["PB9", 61], ["PB10", 65], ["PB11", 69], ["PB12", 73], ["PB13", 77], ["PB14", 81], ["PB15", 85], ["PB16", 89], ["PB17", 93], ["PB18", 97], ["ancient", 101], ["ABC1", 105], ["ABC2", 109], ["GRZ", 113], ["BLK", 117]], "ref": 6, "species": "bear"}, "comment_lines": null, "pos": 7, "dbkey": "canFam2", "individual_columns": [9, 13, 17, 21, 25, 29, 33, 37, 41, 45, 49, 53, 57, 61, 65, 69, 73, 77, 81, 85, 89, 93, 97, 101, 105, 109, 113, 117], "individual_names": ["AK1", "AK2", "AK3", "AK4", "AK5", "PB1", "PB2", "PB3", "PB4", "PB5", "PB6", "PB7", "PB8", "PB9", "PB10", "PB11", "PB12", "PB13", "PB14", "PB15", "PB16", "PB17", "PB18", "ancient", "ABC1", "ABC2", "GRZ", "BLK"], "columns": 137, "scaffold": 6, "column_types": ["str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int"], "ref": 6, "species": "bear", "data_lines": 3573736}}, {"info": "None", "peek": "Contig1_chr1_3211382_3211764\t326\tG\tA\t11.2\tchr1\t3211718\tG\t1\t0\t2\t30\t2\t2\t1\t27\t2\t0\t2\t33\t0\t1\t2\t1\t0\t0\t-1\t0\t1\t2\t1\t12\t3\t2\t1\t28\t0\t3\t0\t6\t0\t2\t0\t3\t3\t2\t1\t30\t2\t0\t2\t33\t3\t0\t2\t36\t3\t0\t2\t36\t0\t1\t0\t0\t2\t1\t2\t2\t2\t2\t1\t19\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t1\t1\t1\t4\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t3\n0\t0\t2\t0\t3\t7\t0\t2\t48\t6\t0\t2\t45\t5\t0\t2\t42\t5\t0\t2\t42\tN\t22\t0.701\t0\t0.2593\t30\t21\t1\t36\t18\t0\t2\t48\t5\t0\t2\t42\t3211718chr1\n\nContig2_chr1_3211779_3212094\t141\tC\tG\t999.0\tchr1\t3211919\tC\t4\t0\t2\t39\t9\t0\t2\t54\t1\t0\t2\t30\t1\t3\t1\t23\t2\t0\t2\t33\t12\t0\t2\t63\t13\t5\t1\t15\t15\t0\t2\t72\t12\t0\t2\t63\t3\t1\t2\t16\t6\t8\t1\t79\t4\t6\t1\t69\t2\t6\t1\t51\t6\t6\t1\t42\t11\t0\t2\t60\t8\t0\t2\t51\t1\t3\t1\t26\t4\t0\t2\t39\t0\t3\t0\t6\t3\t0\t2\t36\t0\t0\t-1\t0\t1\t0\t2\n\t30\t2\t0\t2\t33\t2\t0\t2\t33\t25\t0\t2\t102\t29\t0\t2\t114\t15\t0\t2\t72\t35\t0\t2\t132\tY\t113\t0.479\t0\t0.1439\t122\t41\t1\t79\t69\t0\t2\t114\t35\t0\t2\t132\t3211919chr1\n\nContig7_chr1_3222623_3222988\t154\tT\tA\t999.0\tchr1\t3222773\tT\t4\t5\t1\t36\t1\t0\t2\t30\t4\t0\t2\t39\t0\t0\t-1\t0\t4\t0\t2\t39\t7\t9\t1\t87\t10\t0\t2\t57\t8\t0\t2\t51\t12\t0\t2\t63\t2\t0\t2\t33\t14\t0\t2\t69\t11\t0\t2\t60\t4\t0\t2\t39\t12\t0\t2\t63\t7\t4\t1\t17\t4\t0\t2\t39\t1\t0\t2\t30\t2\t3\t1\t29\t3\t0\t2\t36\t0\t3\t0\t6\t1\t0\t2\t30\t1\t6\t1\n\t21\t1\t0\t2\t30\t3\t0\t2\t36\t34\t0\t2\t129\t44\t0\t2\t159\t35\t1\t2\t118\t35\t0\t2\t132\tY\t3\t0.067\t0\t0.1011\t116\t30\t1\t87\t113\t1\t2\t159\t35\t0\t2\t132\t3222773chr1\n", "update_time": "2013-06-17 04:36:03.259784", "name": "(Method 1) SNPs derived in polar formatted", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_SNPs_derived_in_polar_formatted.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:10:16.997241", "hid": 13, "parent_id": null, "annotation": "None", "blurb": "~2,000,000 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": null, "column_types": ["str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str"], "columns": 138}}, {"info": "None", "peek": "Contig1_chr1_3211382_3211764\t348\tC\tT\t5.84\tchr1\t3211740\tC\t1\t0\t2\t30\t4\t0\t2\t39\t3\t0\t2\t36\t1\t0\t2\t30\t0\t0\t-1\t0\t4\t0\t2\t39\t7\t0\t2\t48\t8\t0\t2\t51\t2\t0\t2\t33\t6\t0\t2\t45\t4\t0\t2\t39\t4\t0\t2\t39\t4\t0\t2\t39\t2\t0\t2\t33\t5\t0\t2\t42\t4\t0\t2\t39\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t3\t0\t2\t36\t0\t0\t-1\t0\t1\t0\t2\t30\t1\n\t0\t2\t30\t2\t0\t2\t33\t0\t8\t0\t21\t4\t0\t2\t39\t8\t0\t2\t51\t4\t0\t2\t39\tN\t22\t+99.\t1\t0.2500\t70\t0\t2\t51\t12\t8\t1\t51\t4\t0\t2\t39\t3211740chr1\n\nContig5_chr1_3215265_3215499\t57\tC\tT\t140.0\tchr1\t3215322\tT\t3\t0\t2\t36\t2\t0\t2\t33\t4\t0\t2\t39\t2\t0\t2\t33\t5\t0\t2\t42\t10\t0\t2\t57\t6\t0\t2\t45\t12\t0\t2\t63\t6\t0\t2\t45\t2\t0\t2\t33\t6\t0\t2\t45\t0\t0\t-1\t0\t9\t0\t2\t54\t10\t0\t2\t57\t9\t0\t2\t54\t2\t0\t2\t33\t1\t0\t2\t30\t3\t0\t2\t36\t1\t0\t2\t30\t3\t0\t2\t36\t3\t0\t2\t36\t0\t0\t-1\t\n0\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t14\t0\t39\t33\t0\t2\t126\t10\t0\t2\t57\t23\t0\t2\t96\tN\t1\t0.672\t0\t0.1400\t99\t0\t2\t63\t43\t14\t1\t126\t23\t0\t2\t96\t3215322chr1\n\nContig6_chr1_3222307_3222559\t72\tG\tT\t18.7\tchr1\t3222378\tG\t2\t0\t2\t33\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t8\t0\t2\t51\t5\t0\t2\t42\t3\t0\t2\t36\t2\t0\t2\t33\t1\t0\t2\t30\t3\t0\t2\t36\t0\t0\t-1\t0\t6\t0\t2\t45\t2\t0\t2\t33\t4\t0\t2\t39\t1\t0\t2\t30\t1\t0\t2\t30\t0\t0\t-1\t0\t2\t0\t2\t33\t0\t0\t-1\t0\t2\t0\t2\t33\t1\t0\t2\t30\t0\t\n0\t-1\t0\t0\t0\t-1\t0\t8\t0\t2\t51\t5\t5\t1\t55\t6\t0\t2\t45\t6\t0\t2\t45\tN\t43\t0.404\t0\t0.1163\t44\t0\t2\t51\t19\t5\t1\t55\t6\t0\t2\t45\t3222378chr1\n", "update_time": "2013-06-17 04:35:48.238152", "name": "(Method 1) SNPs derived in ABC-GRZ formatted", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_SNPs_derived_in_ABC-GRZ_formatted.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:10:39.734761", "hid": 14, "parent_id": null, "annotation": "None", "blurb": "~3,600,000 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": null, "column_types": ["str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str"], "columns": 138}}, {"info": "None", "peek": "chr1\t3254074\tENSCAFT00000000001\tENSCAFP00000000001\tA\t827\tA\t90.9\t155\t100856150\t3254074chr1\n\nchr1\t3255848\tENSCAFT00000000001\tENSCAFP00000000001\tS\t759\tA\t88.9\t119\t100856150\t3255848chr1\n\nchr1\t3261461\tENSCAFT00000000001\tENSCAFP00000000001\tY\t695\tY\t88.6\t121\t100856150\t3261461chr1\n\nchr1\t3261546\tENSCAFT00000000001\tENSCAFP00000000001\tS\t667\tF\t88.6\t121\t100856150\t3261546chr1\n\nchr1\t3266093\tENSCAFT00000000001\tENSCAFP00000000001\tN\t582\tD\t92.6\t144\t100856150\t3266093chr1\n\nchr1\t3266137\tENSCAFT00000000001\tENSCAFP00000000001\tA\t567\tV\t92.6\t144\t100856150\t3266137chr1\n", "update_time": "2013-06-16 22:12:27.561007", "name": "bear SAPs formatted", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/bear_SAPs_formatted.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:12:16.837002", "hid": 15, "parent_id": null, "annotation": "None", "blurb": "79,454 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 79454, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str"], "columns": 11}}, {"info": "None", "peek": "chr1\t3255848\tENSCAFT00000000001\tENSCAFP00000000001\tS\t759\tA\t88.9\t119\t100856150\t3255848chr1\n\nchr1\t3261546\tENSCAFT00000000001\tENSCAFP00000000001\tS\t667\tF\t88.6\t121\t100856150\t3261546chr1\n\nchr1\t3266093\tENSCAFT00000000001\tENSCAFP00000000001\tN\t582\tD\t92.6\t144\t100856150\t3266093chr1\n\nchr1\t3266137\tENSCAFT00000000001\tENSCAFP00000000001\tA\t567\tV\t92.6\t144\t100856150\t3266137chr1\n\nchr1\t3275606\tENSCAFT00000000001\tENSCAFP00000000001\tN\t357\tS\t94.6\t104\t100856150\t3275606chr1\n\nchr1\t3624583\tENSCAFT00000000008\tENSCAFP00000000007\tG\t28\tE\t100.0\t70\t100686027\t3624583chr1\n", "update_time": "2013-06-16 22:13:23.308273", "name": "bear non-synonymous SNPs formatted", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/bear_non-synonymous_SNPs_formatted.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:13:12.787186", "hid": 16, "parent_id": null, "annotation": "None", "blurb": "25,976 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 25976, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str"], "columns": 11}}, {"info": "None", "peek": "chr1\t3702446\tENSCAFT00000037436\tENSCAFP00000032945\tY\t99\tH\t86.8\t99\t606936\t3702446chr1\tContig87_chr1_3702208_3702595\t240\tA\tG\t999.0\tchr1\t3702446\tG\t5\t0\t2\t42\t3\t0\t2\t36\t7\t0\t2\t48\t4\t0\t2\t39\t5\t0\t2\t42\t11\t0\t2\t60\t17\t0\t2\t78\t10\t0\t2\t57\t11\t0\t2\t60\t4\t0\t2\t39\t9\t0\t2\t54\t5\t0\t2\t45\t\n16\t0\t2\t75\t5\t0\t2\t42\t9\t0\t2\t54\t2\t0\t2\t33\t3\t0\t2\t36\t0\t0\t-1\t0\t2\t0\t2\t33\t2\t0\t2\t33\t1\t0\t2\t30\t1\t0\t2\t30\t4\t0\t2\t39\t0\t0\t-1\t0\t0\t22\t0\t63\t0\t12\t0\t33\t0\t12\t0\t33\t0\t21\t0\t60\tY\t-1\t0.236\t4\t1.0000\t136\t0\t2\t78\t0\t46\t0\t63\t0\t21\t0\t60\t3702446chr1\n\nchr1\t3760532\tENSCAFT00000000011\tENSCAFP00000000010\tA\t46\tV\t97.8\t127\t476157\t3760532chr1\tContig197_chr1_3760397_3760629\t136\tC\tT\t39.4\tchr1\t3760532\tC\t2\t0\t2\t33\t3\t0\t2\t36\t5\t0\t2\t42\t4\t0\t2\t39\t4\t0\t2\t39\t10\t1\t2\t35\t3\t0\t2\t39\t9\t0\t2\t54\t8\t0\t2\t51\t1\t0\t2\t30\t12\t0\t2\t63\t4\t0\t2\t39\t1\n4\t0\t2\t69\t13\t0\t2\t66\t6\t6\t1\t67\t4\t0\t2\t39\t2\t0\t2\t33\t2\t0\t2\t33\t6\t0\t2\t45\t6\t0\t2\t45\t0\t0\t-1\t0\t2\t0\t2\t33\t1\t0\t2\t30\t0\t0\t-1\t0\t18\t0\t2\t81\t22\t0\t2\t93\t12\t0\t2\t63\t39\t0\t2\t144\tN\t50\t0.532\t1\t0.0281\t121\t7\t1\t69\t52\t0\t2\t93\t39\t0\t2\t144\t3760532chr1\n\nchr1\t3924018\tENSCAFT00000000012\tENSCAFP00000000011\tP\t745\tL\t97.1\t194\t476158\t3924018chr1\tContig457_chr1_3923769_3924213\t251\tG\tA\t123.0\tchr1\t3924018\tG\t2\t0\t2\t33\t2\t0\t2\t33\t6\t0\t2\t45\t6\t0\t2\t45\t2\t0\t2\t33\t8\t0\t2\t51\t5\t3\t1\t20\t5\t5\t1\t54\t6\t0\t2\t45\t3\t0\t2\t36\t7\t0\t2\t48\t6\t0\t2\t45\t7\n\t2\t2\t5\t5\t0\t2\t42\t7\t0\t2\t51\t3\t0\t2\t36\t4\t0\t2\t39\t3\t0\t2\t36\t2\t0\t2\t33\t1\t2\t1\t23\t2\t0\t2\t36\t3\t0\t2\t36\t5\t0\t2\t42\t0\t0\t-1\t0\t18\t0\t2\t81\t11\t0\t2\t60\t18\t0\t2\t81\t21\t0\t2\t90\tY\t6\t1.536\t4\t0.0566\t100\t12\t1\t54\t47\t0\t2\t81\t21\t0\t2\t90\t3924018chr1\n", "update_time": "2013-06-17 04:35:15.630138", "name": "(Method 1) non-synonymous SNPs derived in polar formatted", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_non-synonymous_SNPs_derived_in_polar_formatted.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:15:33.359947", "hid": 17, "parent_id": null, "annotation": "None", "blurb": "7,429 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 7429, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str"], "columns": 149}}, {"info": "None", "peek": "chr1\t3255848\tENSCAFT00000000001\tENSCAFP00000000001\tS\t759\tA\t88.9\t119\t100856150\t3255848chr1\tContig34_chr1_3255018_3255958\t852\tA\tC\t999.0\tchr1\t3255848\tA\t5\t0\t2\t42\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t2\t0\t2\t33\t9\t0\t2\t54\t8\t0\t2\t51\t12\t0\t2\t63\t13\t0\t2\t66\t2\t0\t2\t33\t11\t0\t2\t60\t7\t0\t2\n\t48\t6\t0\t2\t45\t3\t0\t2\t36\t4\t0\t2\t39\t6\t0\t2\t45\t2\t0\t2\t33\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t0\t-1\t0\t1\t0\t2\t30\t1\t0\t2\t30\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t18\t0\t51\t34\t0\t2\t129\t31\t0\t2\t120\t13\t0\t2\t66\tY\t81\t0.168\t1\t0.1216\t98\t0\t2\t66\t65\t18\t1\t129\t13\t0\t2\t66\t3255848chr1\n\nchr1\t3266093\tENSCAFT00000000001\tENSCAFP00000000001\tN\t582\tD\t92.6\t144\t100856150\t3266093chr1\tContig46_chr1_3265165_3266703\t946\tT\tC\t143.0\tchr1\t3266093\tT\t2\t0\t2\t33\t4\t0\t2\t39\t5\t0\t2\t42\t3\t0\t2\t36\t3\t0\t2\t36\t7\t0\t2\t48\t14\t0\t2\t69\t13\t0\t2\t66\t4\t0\t2\t39\t5\t0\t2\t42\t10\t0\t2\t57\t3\t0\t2\n\t36\t6\t0\t2\t45\t6\t0\t2\t45\t6\t0\t2\t45\t5\t0\t2\t42\t3\t0\t2\t36\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t0\t-1\t0\t3\t0\t2\t36\t0\t20\t0\t57\t29\t0\t2\t114\t22\t0\t2\t93\t18\t0\t2\t81\tY\t44\t0.373\t0\t0.1639\t104\t0\t2\t69\t51\t20\t1\t114\t18\t0\t2\t81\t3266093chr1\n\nchr1\t3924024\tENSCAFT00000000012\tENSCAFP00000000011\tP\t743\tL\t97.1\t194\t476158\t3924024chr1\tContig457_chr1_3923769_3924213\t257\tG\tA\t45.1\tchr1\t3924024\tG\t2\t0\t2\t33\t2\t0\t2\t33\t6\t0\t2\t45\t6\t0\t2\t45\t2\t0\t2\t33\t10\t0\t2\t57\t8\t0\t2\t51\t13\t0\t2\t66\t6\t0\t2\t45\t3\t0\t2\t36\t7\t0\t2\t48\t5\t0\t2\t45\t\n9\t0\t2\t54\t6\t0\t2\t45\t8\t0\t2\t51\t4\t0\t2\t39\t4\t0\t2\t39\t3\t0\t2\t36\t1\t0\t2\t30\t3\t0\t2\t36\t4\t0\t2\t39\t2\t0\t2\t33\t7\t0\t2\t48\t0\t0\t-1\t0\t8\t7\t1\t62\t9\t0\t2\t54\t17\t0\t2\t78\t20\t0\t2\t87\tY\t6\t0.541\t2\t0.0933\t121\t0\t2\t66\t34\t7\t1\t78\t20\t0\t2\t87\t3924024chr1\n", "update_time": "2013-06-17 04:34:42.467126", "name": "(Method 1) non-synonymous SNPs derived in ABC-GRZ formatted", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_non-synonymous_SNPs_derived_in_ABC-GRZ_formatted.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:17:25.455963", "hid": 18, "parent_id": null, "annotation": "None", "blurb": "7,162 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 7162, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str"], "columns": 149}}, {"info": "uploaded tabular file", "peek": "76\tENSCAFT00000000001\tchr1\t-\t3251711\t3321555\t3252000\t3321555\t24\t3251711,3254074,3255805,3256770,3261442,3263132,3266078,3267859,3268674,3270092,3271373,3273173,3275526,3277853,3278236,3279203,3280378,3281502,3283470,3285512,3286450,3287395,3289282,3321438,\n\t3252171,3254237,3255938,3256851,3261572,3263347,3266237,3267947,3268744,3270220,3271405,3273305,3275635,3277926,3278302,3279313,3280498,3281582,3283568,3285573,3286576,3287512,3289355,3321555,\t0\tENSCAFG00000000001\tcmpl\tincmpl\t0,2,1,1,0,1,1,0,2,0,1,1,0,2,2\n,0,0,1,2,1,1,1,0,0,\tENPP1\tENSCAFT00000000001\tENSCAFP00000000001\t100856150\t3'-phosphoadenosine 5'-phosphosulfate metabolic process.ATP binding.bone remodeling.cell surface.cellular phosphate ion homeostasis.cellular response to insulin stimulus.extracellula\nr space.generation of precursor metabolites and energy.inorganic diphosphate transport.insulin receptor binding.negative regulation of cell growth.negative regulation of fat cell differentiation.negative regulation of glucose import.negative regulation of \nglycogen biosynthetic process.negative regulation of insulin receptor signaling pathway.negative regulation of ossification.negative regulation of protein autophosphorylation.nucleoside triphosphate catabolic process.nucleoside-triphosphate diphosphatase a\nctivity.nucleotide diphosphatase activity.phosphate-containing compound metabolic process.plasma membrane.protein binding.protein homodimerization activity.sequestering of triglyceride\n", "update_time": "2013-06-17 04:41:26.980002", "name": "bear genes + GO", "extension": "interval", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/bear_genes___GO.interval", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-16 22:22:50.568828", "hid": 19, "parent_id": null, "annotation": "None", "blurb": "19,305 regions", "metadata": {"chromCol": 3, "column_names": null, "nameCol": 2, "comment_lines": null, "endCol": 6, "dbkey": "canFam2", "strandCol": 4, "startCol": 5, "columns": 21, "column_types": ["int", "str", "str", "str", "int", "int", "int", "int", "int", "list", "list", "int", "str", "str", "str", "list", "str", "str", "str", "str", "str"], "data_lines": 19305}}, {"info": "None", "peek": "5\t1\t1\t0.0020\tpolysaccharide binding\n\n5\t1\t1\t0.0020\tanion transmembrane transporter activity\n\n4\t1\t1\t0.0070\tresponse to temperature stimulus\n\n4\t1\t1\t0.0070\tprotein targeting to lysosome\n\n4\t1\t1\t0.0070\tmuscle alpha-actinin binding\n\n4\t1\t1\t0.0070\tequilibrioception\n", "update_time": "2013-06-17 04:33:51.452993", "name": "(Method 1) Rank GO terms on non-synonymous SNPs derived in polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Rank_GO_terms_on_non-synonymous_SNPs_derived_in_polar.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-16 22:28:51.706803", "hid": 22, "parent_id": null, "annotation": "None", "blurb": "10,458 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 10458, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 2.46% of 10458 valid lines (10458 total lines).\r\n", "peek": "5\t1\t1\t0.0020\tpolysaccharide binding\n\n5\t1\t1\t0.0020\tanion transmembrane transporter activity\n\n4\t1\t1\t0.0070\tresponse to temperature stimulus\n\n4\t1\t1\t0.0070\tprotein targeting to lysosome\n\n4\t1\t1\t0.0070\tmuscle alpha-actinin binding\n\n4\t1\t1\t0.0070\tequilibrioception\n", "update_time": "2013-06-17 04:33:31.343968", "name": "(Method 1) Rank GO terms on non-synonymous SNPs derived in polar (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Rank_GO_terms_on_non-synonymous_SNPs_derived_in_polar_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:30:01.474768", "hid": 23, "parent_id": null, "annotation": "None", "blurb": "257 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 257, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "None", "peek": "6\t1\t1\t0.00031\tcollagen type IV\n\n5\t1\t1\t0.0012\tleukocyte tethering or rolling\n\n5\t1\t1\t0.0012\tendodeoxyribonuclease activity\n\n4\t1\t1\t0.0045\tvitamin D metabolic process\n\n4\t1\t1\t0.0045\tsingle-stranded DNA specific endodeoxyribonuclease activity\n\n4\t1\t1\t0.0045\tmuscle alpha-actinin binding\n", "update_time": "2013-06-17 04:33:16.292226", "name": "(Method 1) Rank GO terms on non-synonymous SNPs derived in ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Rank_GO_terms_on_non-synonymous_SNPs_derived_in_ABC-GRZ.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-16 22:31:15.953030", "hid": 24, "parent_id": null, "annotation": "None", "blurb": "10,458 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 10458, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 2.59% of 10458 valid lines (10458 total lines).\r\n", "peek": "6\t1\t1\t0.00031\tcollagen type IV\n\n5\t1\t1\t0.0012\tleukocyte tethering or rolling\n\n5\t1\t1\t0.0012\tendodeoxyribonuclease activity\n\n4\t1\t1\t0.0045\tvitamin D metabolic process\n\n4\t1\t1\t0.0045\tsingle-stranded DNA specific endodeoxyribonuclease activity\n\n4\t1\t1\t0.0045\tmuscle alpha-actinin binding\n", "update_time": "2013-06-17 04:33:00.870003", "name": "(Method 1) Rank GO terms on non-synonymous SNPs derived in ABC-GRZ (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Rank_GO_terms_on_non-synonymous_SNPs_derived_in_ABC-GRZ_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:32:29.999705", "hid": 25, "parent_id": null, "annotation": "None", "blurb": "271 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 271, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "chr1\t3702446\tENSCAFT00000037436\tENSCAFP00000032945\tY\t99\tH\t86.8\t99\t606936\t3702446chr1\tContig87_chr1_3702208_3702595\t240\tA\tG\t999.0\tchr1\t3702446\tG\t5\t0\t2\t42\t3\t0\t2\t36\t7\t0\t2\t48\t4\t0\t2\t39\t5\t0\t2\t42\t11\t0\t2\t60\t17\t0\t2\t78\t10\t0\t2\t57\t11\t0\t2\t60\t4\t0\t2\t39\t9\t0\t2\t54\t5\t0\t2\t45\t\n16\t0\t2\t75\t5\t0\t2\t42\t9\t0\t2\t54\t2\t0\t2\t33\t3\t0\t2\t36\t0\t0\t-1\t0\t2\t0\t2\t33\t2\t0\t2\t33\t1\t0\t2\t30\t1\t0\t2\t30\t4\t0\t2\t39\t0\t0\t-1\t0\t0\t22\t0\t63\t0\t12\t0\t33\t0\t12\t0\t33\t0\t21\t0\t60\tY\t-1\t0.236\t4\t1.0000\t136\t0\t2\t78\t0\t46\t0\t63\t0\t21\t0\t60\t3702446chr1\t606936\tN\n\nchr1\t3760532\tENSCAFT00000000011\tENSCAFP00000000010\tA\t46\tV\t97.8\t127\t476157\t3760532chr1\tContig197_chr1_3760397_3760629\t136\tC\tT\t39.4\tchr1\t3760532\tC\t2\t0\t2\t33\t3\t0\t2\t36\t5\t0\t2\t42\t4\t0\t2\t39\t4\t0\t2\t39\t10\t1\t2\t35\t3\t0\t2\t39\t9\t0\t2\t54\t8\t0\t2\t51\t1\t0\t2\t30\t12\t0\t2\t63\t4\t0\t2\t39\t1\n4\t0\t2\t69\t13\t0\t2\t66\t6\t6\t1\t67\t4\t0\t2\t39\t2\t0\t2\t33\t2\t0\t2\t33\t6\t0\t2\t45\t6\t0\t2\t45\t0\t0\t-1\t0\t2\t0\t2\t33\t1\t0\t2\t30\t0\t0\t-1\t0\t18\t0\t2\t81\t22\t0\t2\t93\t12\t0\t2\t63\t39\t0\t2\t144\tN\t50\t0.532\t1\t0.0281\t121\t7\t1\t69\t52\t0\t2\t93\t39\t0\t2\t144\t3760532chr1\tU\tN\n\nchr1\t3924018\tENSCAFT00000000012\tENSCAFP00000000011\tP\t745\tL\t97.1\t194\t476158\t3924018chr1\tContig457_chr1_3923769_3924213\t251\tG\tA\t123.0\tchr1\t3924018\tG\t2\t0\t2\t33\t2\t0\t2\t33\t6\t0\t2\t45\t6\t0\t2\t45\t2\t0\t2\t33\t8\t0\t2\t51\t5\t3\t1\t20\t5\t5\t1\t54\t6\t0\t2\t45\t3\t0\t2\t36\t7\t0\t2\t48\t6\t0\t2\t45\t7\n\t2\t2\t5\t5\t0\t2\t42\t7\t0\t2\t51\t3\t0\t2\t36\t4\t0\t2\t39\t3\t0\t2\t36\t2\t0\t2\t33\t1\t2\t1\t23\t2\t0\t2\t36\t3\t0\t2\t36\t5\t0\t2\t42\t0\t0\t-1\t0\t18\t0\t2\t81\t11\t0\t2\t60\t18\t0\t2\t81\t21\t0\t2\t90\tY\t6\t1.536\t4\t0.0566\t100\t12\t1\t54\t47\t0\t2\t81\t21\t0\t2\t90\t3924018chr1\t476158\tN\n", "update_time": "2013-06-17 04:32:40.786275", "name": "(Method 1) Get Pathways on bear non-synonymous SNPs formatted polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Get_Pathways_on_bear_non-synonymous_SNPs_formatted_polar.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-16 22:36:46.241314", "hid": 26, "parent_id": null, "annotation": "None", "blurb": "7,429 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 7429, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "str", "str"], "columns": 151}}, {"info": "None", "peek": "chr1\t3255848\tENSCAFT00000000001\tENSCAFP00000000001\tS\t759\tA\t88.9\t119\t100856150\t3255848chr1\tContig34_chr1_3255018_3255958\t852\tA\tC\t999.0\tchr1\t3255848\tA\t5\t0\t2\t42\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t2\t0\t2\t33\t9\t0\t2\t54\t8\t0\t2\t51\t12\t0\t2\t63\t13\t0\t2\t66\t2\t0\t2\t33\t11\t0\t2\t60\t7\t0\t2\n\t48\t6\t0\t2\t45\t3\t0\t2\t36\t4\t0\t2\t39\t6\t0\t2\t45\t2\t0\t2\t33\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t0\t-1\t0\t1\t0\t2\t30\t1\t0\t2\t30\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t18\t0\t51\t34\t0\t2\t129\t31\t0\t2\t120\t13\t0\t2\t66\tY\t81\t0.168\t1\t0.1216\t98\t0\t2\t66\t65\t18\t1\t129\t13\t0\t2\t66\t3255848chr1\t476153\tcfa00230=Purine metabolism.cfa0\n0500=Starch and sucrose metabolism.cfa00740=Riboflavin metabolism.cfa00760=Nicotinate and nicotinamide metabolism.cfa00770=Pantothenate and CoA biosynthesis.cfa01100=Metabolic pathways\n\nchr1\t3266093\tENSCAFT00000000001\tENSCAFP00000000001\tN\t582\tD\t92.6\t144\t100856150\t3266093chr1\tContig46_chr1_3265165_3266703\t946\tT\tC\t143.0\tchr1\t3266093\tT\t2\t0\t2\t33\t4\t0\t2\t39\t5\t0\t2\t42\t3\t0\t2\t36\t3\t0\t2\t36\t7\t0\t2\t48\t14\t0\t2\t69\t13\t0\t2\t66\t4\t0\t2\t39\t5\t0\t2\t42\t10\t0\t2\t57\t3\t0\t2\n\t36\t6\t0\t2\t45\t6\t0\t2\t45\t6\t0\t2\t45\t5\t0\t2\t42\t3\t0\t2\t36\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t0\t-1\t0\t3\t0\t2\t36\t0\t20\t0\t57\t29\t0\t2\t114\t22\t0\t2\t93\t18\t0\t2\t81\tY\t44\t0.373\t0\t0.1639\t104\t0\t2\t69\t51\t20\t1\t114\t18\t0\t2\t81\t3266093chr1\t476153\tcfa00230=Purine metabolism.cfa0\n0500=Starch and sucrose metabolism.cfa00740=Riboflavin metabolism.cfa00760=Nicotinate and nicotinamide metabolism.cfa00770=Pantothenate and CoA biosynthesis.cfa01100=Metabolic pathways\n", "update_time": "2013-06-17 04:32:22.063298", "name": "(Method 1) Get Pathways on bear non-synonymous SNPs formatted ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Get_Pathways_on_bear_non-synonymous_SNPs_formatted_ABC-GRZ.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-16 22:37:56.829599", "hid": 27, "parent_id": null, "annotation": "None", "blurb": "7,162 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 7162, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "str", "str"], "columns": 151}}, {"info": "", "peek": "2\t1\t1\t0.037\tcfa00780=Biotin metabolism\n\n4\t0.57\t2\t0.029\tcfa00460=Cyanoamino acid metabolism\n\n5\t0.56\t3\t0.016\tcfa00062=Fatty acid elongation\n\n8\t0.5\t4\t0.0054\tcfa00450=Selenocompound metabolism\n\n2\t0.5\t4\t0.17\tcfa00061=Fatty acid biosynthesis\n\n39\t0.49\t6\t1.7E-9\tcfa04512=ECM-receptor interaction\n", "update_time": "2013-06-17 04:32:01.838453", "name": "(Method 1) Rank Pathways on bear non-synonymous SNPs formatted polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Rank_Pathways_on_bear_non-synonymous_SNPs_formatted_polar.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-16 22:40:26.369907", "hid": 29, "parent_id": null, "annotation": "None", "blurb": "241 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 241, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "1\t1\t1\t0.18\tcfa00472=D-Arginine and D-ornithine metabolism\n\n7\t0.58\t2\t0.0018\tcfa03450=Non-homologous end-joining\n\n4\t0.57\t3\t0.022\tcfa00460=Cyanoamino acid metabolism\n\n8\t0.5\t4\t0.0031\tcfa00450=Selenocompound metabolism\n\n2\t0.5\t4\t0.15\tcfa00750=Vitamin B6 metabolism\n\n1\t0.5\t4\t0.32\tcfa00780=Biotin metabolism\n", "update_time": "2013-06-17 04:31:45.907472", "name": "(Method 1) Rank Pathways on bear non-synonymous SNPs formatted ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Rank_Pathways_on_bear_non-synonymous_SNPs_formatted_ABC-GRZ.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-16 22:40:39.280009", "hid": 30, "parent_id": null, "annotation": "None", "blurb": "241 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 241, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 23.65% of 241 valid lines (241 total lines).\r\n", "peek": "2\t1\t1\t0.037\tcfa00780=Biotin metabolism\n\n4\t0.57\t2\t0.029\tcfa00460=Cyanoamino acid metabolism\n\n5\t0.56\t3\t0.016\tcfa00062=Fatty acid elongation\n\n8\t0.5\t4\t0.0054\tcfa00450=Selenocompound metabolism\n\n39\t0.49\t6\t1.7E-9\tcfa04512=ECM-receptor interaction\n\n20\t0.49\t6\t0.000019\tcfa02010=ABC transporters\n", "update_time": "2013-06-17 04:31:32.008486", "name": "(Method 1) Rank Pathways on bear non-synonymous SNPs formatted polar (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Rank_Pathways_on_bear_non-synonymous_SNPs_formatted_polar_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:41:59.133845", "hid": 31, "parent_id": null, "annotation": "None", "blurb": "57 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 57, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "None", "peek": "7\t0.58\t2\t0.0018\tcfa03450=Non-homologous end-joining\n\n4\t0.57\t3\t0.022\tcfa00460=Cyanoamino acid metabolism\n\n8\t0.5\t4\t0.0031\tcfa00450=Selenocompound metabolism\n\n22\t0.49\t7\t0.0000017\tcfa03460=Fanconi anemia pathway\n\n9\t0.47\t8\t0.0028\tcfa00531=Glycosaminoglycan degradation\n\n8\t0.47\t8\t0.0050\tcfa00511=Other glycan degradation\n", "update_time": "2013-06-17 04:31:18.067683", "name": "(Method 1) Rank Pathways on bear non-synonymous SNPs formatted ABC-GRZ (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Rank_Pathways_on_bear_non-synonymous_SNPs_formatted_ABC-GRZ_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:42:32.789240", "hid": 32, "parent_id": null, "annotation": "None", "blurb": "54 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 54, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1, \r\nkept 2.72% of 257 valid lines (257 total lines).\r\n", "peek": "3\t1\t1\t0.024\ttranscription from mitochondrial promoter\n\n10\t0.62\t14\t0.0096\tATPase activity, coupled to transmembrane movement of substances\n\n14\t0.58\t18\t0.0028\tmitochondrial nucleoid\n\n32\t0.48\t27\t0.00093\tATP catabolic process\n\n32\t0.47\t28\t0.0018\tATPase activity\n\n15\t0.47\t28\t0.032\tATP-dependent helicase activity\n", "update_time": "2013-06-17 04:29:32.488436", "name": "(Method 1) GO terms on non-synonymous SNPs derived in polar (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_GO_terms_on_non-synonymous_SNPs_derived_in_polar_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:46:51.545506", "hid": 34, "parent_id": null, "annotation": "None", "blurb": "7 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 7, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1, \r\nkept 2.21% of 271 valid lines (271 total lines).\r\n", "peek": "3\t1\t1\t0.017\ttranscription from mitochondrial promoter\n\n4\t0.67\t11\t0.043\tphospholipid-translocating ATPase activity\n\n12\t0.5\t25\t0.017\tmitochondrial nucleoid\n\n27\t0.41\t34\t0.010\tATP catabolic process\n\n26\t0.38\t37\t0.026\tATPase activity\n\n180\t0.31\t44\t0.0054\tATP binding\n", "update_time": "2013-06-17 04:29:18.638108", "name": "(Method 1) GO terms on non-synonymous SNPs derived in ABC-GRZ (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_GO_terms_on_non-synonymous_SNPs_derived_in_ABC-GRZ_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:50:12.895795", "hid": 36, "parent_id": null, "annotation": "None", "blurb": "6 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 6, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1, \r\nkept 1.75% of 57 valid lines (57 total lines).\r\n", "peek": "14\t0.095\t218\t0.0027\tcfa00190=Oxidative phosphorylation\n\n\n\n\n\n", "update_time": "2013-06-17 04:29:03.890309", "name": "(Method 1) Pathways on non-synonymous SNPs derived in polar (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Pathways_on_non-synonymous_SNPs_derived_in_polar_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:52:13.928384", "hid": 37, "parent_id": null, "annotation": "None", "blurb": "1 line", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 1, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1, \r\nkept 1.85% of 54 valid lines (54 total lines).\r\n", "peek": "11\t0.074\t226\t0.00036\tcfa00190=Oxidative phosphorylation\n\n\n\n\n\n", "update_time": "2013-06-17 04:28:44.919196", "name": "(Method 1) Pathways on non-synonymous SNPs derived in ABC-GRZ (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Pathways_on_non-synonymous_SNPs_derived_in_ABC-GRZ_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:52:59.241899", "hid": 38, "parent_id": null, "annotation": "None", "blurb": "1 line", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 1, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "NoneFiltering with (c128==2 and c132==0) or (c128==0 and c132==2), \r\nkept 12.93% of 7290488 valid lines (7290488 total lines).\r\n", "peek": "Contig137_chr1_3318581_3318883\t163\tT\tC\t999.0\tchr1\t3318736\tT\t5\t0\t2\t42\t6\t0\t2\t45\t2\t0\t2\t33\t2\t0\t2\t33\t3\t0\t2\t36\t18\t0\t2\t81\t19\t0\t2\t84\t20\t0\t2\t87\t19\t0\t2\t84\t1\t0\t2\t30\t16\t0\t2\t75\t8\t0\t2\t51\t17\t0\t2\t78\t7\t0\t2\t48\t12\t0\t2\t63\t4\t0\t2\t39\t2\t0\t2\t33\t1\t0\t2\t30\t5\t0\t2\t42\t0\t0\t-1\t0\t2\t0\t2\t33\t1\t0\t2\t30\t3\t0\t2\t36\t0\t0\t-1\t0\t0\t31\t0\t90\t0\t40\t0\t117\t0\t42\t0\t123\t41\t0\t2\t150\tY\t78\t0.175\t2\t1.0000\t173\t0\t2\t87\t0\t113\t0\t123\t41\t0\t2\t150\n\nContig167_chr1_3341093_3341273\t155\tA\tG\t999.0\tchr1\t3341248\tG\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t1\t2\t10\t1\t1\t2\t10\t4\t0\t2\t39\t4\t0\t2\t39\t1\t0\t2\t30\t3\t0\t2\t36\t1\t0\t2\t30\t3\t0\t2\t36\t1\t0\t2\t30\t3\t0\t2\t36\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t30\t1\t0\t2\t30\t1\t0\t2\t30\t0\t0\t-1\t0\t2\t0\t2\t33\t0\t0\t-1\t0\t0\t6\t0\t18\t0\t11\t0\t33\t0\t3\t0\t6\t8\t0\t2\t51\tN\t596\t+99.\t1\t0.8750\t28\t2\t2\t39\t0\t20\t0\t33\t8\t0\t2\t51\n\nContig36_chr1_3378709_3378915\t79\tA\tG\t999.0\tchr1\t3378792\tA\t2\t0\t2\t33\t0\t0\t-1\t0\t2\t0\t2\t33\t4\t0\t2\t39\t2\t0\t2\t33\t19\t0\t2\t84\t7\t0\t2\t48\t21\t0\t2\t90\t13\t0\t2\t66\t1\t0\t2\t30\t10\t0\t2\t57\t6\t0\t2\t45\t11\t0\t2\t60\t8\t0\t2\t51\t8\t0\t2\t51\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t3\t0\t2\t36\t1\t0\t2\t30\t1\t0\t2\t30\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t20\t0\t57\t0\t17\t0\t48\t0\t25\t0\t53\t0\t27\t0\t81\tN\t45\t1.560\t3\t1.0000\t124\t0\t2\t90\t0\t62\t0\t57\t0\t27\t0\t81\n\nContig36_chr1_3378709_3378915\t139\tG\tT\t999.0\tchr1\t3378852\tT\t3\t0\t2\t36\t0\t0\t-1\t0\t0\t0\t-1\t0\t2\t0\t2\t33\t2\t0\t2\t33\t10\t0\t2\t57\t3\t0\t2\t36\t9\t0\t2\t54\t8\t0\t2\t51\t2\t0\t2\t33\t10\t0\t2\t57\t4\t0\t2\t39\t6\t0\t2\t45\t4\t0\t2\t39\t7\t0\t2\t48\t1\t0\t2\t30\t0\t0\t-1\t0\t1\t0\t2\t30\t3\t0\t2\t36\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t13\t0\t36\t0\t9\t0\t24\t0\t8\t0\t21\t16\t0\t2\t75\tN\t60\t2.472\t0\t1.0000\t75\t0\t2\t57\t0\t30\t0\t36\t16\t0\t2\t75\n\nContig49_chr1_3400642_3400841\t173\tG\tA\t198.0\tchr1\t3400808\t-\t3\t0\t2\t36\t2\t0\t2\t33\t1\t0\t2\t30\t2\t0\t2\t33\t0\t0\t-1\t0\t3\t0\t2\t36\t8\t0\t2\t51\t5\t0\t2\t42\t6\t0\t2\t45\t3\t0\t2\t36\t6\t0\t2\t45\t1\t0\t2\t30\t5\t0\t2\t42\t2\t0\t2\t33\t7\t0\t2\t48\t4\t0\t2\t39\t2\t0\t2\t33\t1\t0\t2\t30\t1\t0\t2\t30\t2\t0\t2\t33\t1\t0\t2\t30\t2\t0\t2\t33\t2\t0\t2\t33\t0\t0\t-1\t0\t0\t7\t0\t18\t0\t8\t0\t21\t0\t7\t0\t18\t18\t0\t2\t81\tN\t15\t0.044\t1\t1.0000\t69\t0\t2\t51\t0\t22\t0\t21\t18\t0\t2\t81\n\nContig105_chr1_3499346_3499513\t131\tC\tG\t60.7\tchr1\t-1\tN\t1\t0\t2\t30\t2\t0\t2\t33\t0\t0\t-1\t0\t2\t0\t2\t33\t1\t0\t2\t30\t3\t0\t2\t36\t1\t0\t2\t30\t3\t0\t2\t36\t1\t0\t2\t30\t0\t0\t-1\t0\t4\t0\t2\t39\t1\t0\t2\t30\t5\t0\t2\t42\t4\t0\t2\t39\t3\t0\t2\t36\t2\t0\t2\t33\t0\t0\t-1\t0\t2\t0\t2\t33\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t0\t-1\t0\t2\t0\t2\t33\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t6\t0\t15\t0\t0\t-1\t0\t0\t2\t0\t3\t4\t0\t2\t39\tN\t-1\t1.657\t1\t1.0000\t38\t0\t2\t42\t0\t8\t0\t15\t4\t0\t2\t39\n", "update_time": "2013-06-17 04:38:44.061299", "name": "(Method 2) Polar and ABC-GRZ have a different fixed allele", "extension": "gd_snp", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Polar_and_ABC-GRZ_have_a_different_fixed_allele.gd_snp", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-17 04:25:59.436649", "hid": 42, "parent_id": null, "annotation": "None", "blurb": "942,375 lines", "metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "comment_metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "scaffold": 1, "pos": 2, "dbkey": "canFam2", "individuals": [["AK1", 9], ["AK2", 13], ["AK3", 17], ["AK4", 21], ["AK5", 25], ["PB1", 29], ["PB2", 33], ["PB3", 37], ["PB4", 41], ["PB5", 45], ["PB6", 49], ["PB7", 53], ["PB8", 57], ["PB9", 61], ["PB10", 65], ["PB11", 69], ["PB12", 73], ["PB13", 77], ["PB14", 81], ["PB15", 85], ["PB16", 89], ["PB17", 93], ["PB18", 97], ["ancient", 101], ["ABC1", 105], ["ABC2", 109], ["GRZ", 113], ["BLK", 117]], "ref": 6, "species": "bear"}, "comment_lines": null, "pos": 7, "dbkey": "canFam2", "individual_columns": [9, 13, 17, 21, 25, 29, 33, 37, 41, 45, 49, 53, 57, 61, 65, 69, 73, 77, 81, 85, 89, 93, 97, 101, 105, 109, 113, 117], "individual_names": ["AK1", "AK2", "AK3", "AK4", "AK5", "PB1", "PB2", "PB3", "PB4", "PB5", "PB6", "PB7", "PB8", "PB9", "PB10", "PB11", "PB12", "PB13", "PB14", "PB15", "PB16", "PB17", "PB18", "ancient", "ABC1", "ABC2", "GRZ", "BLK"], "columns": 137, "scaffold": 6, "column_types": ["str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int"], "ref": 6, "species": "bear", "data_lines": 942375}}, {"info": "None", "peek": "Contig137_chr1_3318581_3318883\t163\tT\tC\t999.0\tchr1\t3318736\tT\t5\t0\t2\t42\t6\t0\t2\t45\t2\t0\t2\t33\t2\t0\t2\t33\t3\t0\t2\t36\t18\t0\t2\t81\t19\t0\t2\t84\t20\t0\t2\t87\t19\t0\t2\t84\t1\t0\t2\t30\t16\t0\t2\t75\t8\t0\t2\t51\t17\t0\t2\t78\t7\t0\t2\t48\t12\t0\t2\t63\t4\t0\t2\t39\t2\t0\t2\t33\t1\t0\t2\t30\t5\t0\t2\t42\t0\t0\t-1\t0\t2\t0\t2\t33\t\n1\t0\t2\t30\t3\t0\t2\t36\t0\t0\t-1\t0\t0\t31\t0\t90\t0\t40\t0\t117\t0\t42\t0\t123\t41\t0\t2\t150\tY\t78\t0.175\t2\t1.0000\t173\t0\t2\t87\t0\t113\t0\t123\t41\t0\t2\t150\t3318736chr1\n\nContig167_chr1_3341093_3341273\t155\tA\tG\t999.0\tchr1\t3341248\tG\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t1\t2\t10\t1\t1\t2\t10\t4\t0\t2\t39\t4\t0\t2\t39\t1\t0\t2\t30\t3\t0\t2\t36\t1\t0\t2\t30\t3\t0\t2\t36\t1\t0\t2\t30\t3\t0\t2\t36\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t30\t1\t0\t2\t30\t1\t0\t2\t30\t0\t0\t-1\t\n0\t2\t0\t2\t33\t0\t0\t-1\t0\t0\t6\t0\t18\t0\t11\t0\t33\t0\t3\t0\t6\t8\t0\t2\t51\tN\t596\t+99.\t1\t0.8750\t28\t2\t2\t39\t0\t20\t0\t33\t8\t0\t2\t51\t3341248chr1\n\nContig36_chr1_3378709_3378915\t79\tA\tG\t999.0\tchr1\t3378792\tA\t2\t0\t2\t33\t0\t0\t-1\t0\t2\t0\t2\t33\t4\t0\t2\t39\t2\t0\t2\t33\t19\t0\t2\t84\t7\t0\t2\t48\t21\t0\t2\t90\t13\t0\t2\t66\t1\t0\t2\t30\t10\t0\t2\t57\t6\t0\t2\t45\t11\t0\t2\t60\t8\t0\t2\t51\t8\t0\t2\t51\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t3\t0\t2\t36\t1\t0\t2\t30\t1\t0\t2\t30\t0\t0\t\n-1\t0\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t20\t0\t57\t0\t17\t0\t48\t0\t25\t0\t53\t0\t27\t0\t81\tN\t45\t1.560\t3\t1.0000\t124\t0\t2\t90\t0\t62\t0\t57\t0\t27\t0\t81\t3378792chr1\n", "update_time": "2013-06-17 04:39:15.787813", "name": "(Method 2) Polar and ABC-GRZ have a different fixed allele formatted", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Polar_and_ABC-GRZ_have_a_different_fixed_allele_formatted.tabular", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-17 04:25:59.581400", "hid": 43, "parent_id": null, "annotation": "None", "blurb": "~960,000 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": null, "column_types": ["str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str"], "columns": 138}}, {"info": "None", "peek": "chr28\t10009188\tENSCAFT00000012011\tENSCAFP00000011137\tE\t427\tD\t100.0\t87\t477769\t10009188chr28\n\nchr28\t10010785\tENSCAFT00000012011\tENSCAFP00000011137\tQ\t477\tQ\t95.2\t181\t477769\t10010785chr28\n\nchr28\t10011559\tENSCAFT00000012011\tENSCAFP00000011137\tA\t525\tA\t95.7\t198\t477769\t10011559chr28\n\nchr27\t10012030\tENSCAFT00000014611\tENSCAFP00000013515\tG\t212\tG\t93.0\t152\t486591\t10012030chr27\n\nchr27\t10018996\tENSCAFT00000014611\tENSCAFP00000013515\tC\t556\tC\t85.7\t77\t486591\t10018996chr27\n\nchr27\t10022079\tENSCAFT00000014611\tENSCAFP00000013515\tL\t695\tL\t100.0\t175\t486591\t10022079chr27\n", "update_time": "2013-06-17 04:43:41.480445", "name": "(Method 2) Genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 04:42:31.483902", "hid": 57, "parent_id": null, "annotation": "None", "blurb": "7,635 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 7635, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str"], "columns": 11}}, {"info": "Filtering with c5!=c7, \r\nkept 29.13% of 7635 valid lines (7635 total lines).\r\n", "peek": "chr28\t10009188\tENSCAFT00000012011\tENSCAFP00000011137\tE\t427\tD\t100.0\t87\t477769\t10009188chr28\n\nchr1\t101020385\tENSCAFT00000003500\tENSCAFP00000003246\tC\t523\tR\t86.7\t1079\t476357\t101020385chr1\n\nchr1\t101024430\tENSCAFT00000003500\tENSCAFP00000003246\tI\t152\tV\t97.6\t113\t476357\t101024430chr1\n\nchrX\t10138759\tENSCAFT00000018685\tENSCAFP00000017310\tC\t760\tR\t89.5\t50\t480841\t10138759chrX\n\nchr1\t101561323\tENSCAFT00000003560\tENSCAFP00000003298\tA\t715\tV\t96.6\t80\tU\t101561323chr1\n\nchr1\t101566210\tENSCAFT00000003560\tENSCAFP00000003298\tF\t588\tL\t92.6\t255\tU\t101566210chr1\n", "update_time": "2013-06-17 05:05:08.227723", "name": "(Method 2) non-synonymous SNPs in genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_non-synonymous_SNPs_in_genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 04:44:13.255754", "hid": 58, "parent_id": null, "annotation": "None", "blurb": "2,224 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 2224, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str"], "columns": 11}}, {"info": "", "peek": "4\t1\t1\t0.000099\tmuscle alpha-actinin binding\n\n2\t1\t1\t0.010\tspectrin\n\n2\t1\t1\t0.010\tsodium-dependent phosphate transport\n\n2\t1\t1\t0.010\tsecretion\n\n2\t1\t1\t0.010\tryanodine-sensitive calcium-release channel activity\n\n2\t1\t1\t0.010\tpulmonary artery morphogenesis\n", "update_time": "2013-06-17 05:05:20.849958", "name": "(Method 2) Rank GO terms on non-synonymous SNPs in genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_GO_terms_on_non-synonymous_SNPs_in_genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 04:53:17.057952", "hid": 59, "parent_id": null, "annotation": "None", "blurb": "10,458 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 10458, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "chr28\t10009188\tENSCAFT00000012011\tENSCAFP00000011137\tE\t427\tD\t100.0\t87\t477769\t10009188chr28\t477769\tN\n\nchr1\t101020385\tENSCAFT00000003500\tENSCAFP00000003246\tC\t523\tR\t86.7\t1079\t476357\t101020385chr1\t476357\tN\n\nchr1\t101024430\tENSCAFT00000003500\tENSCAFP00000003246\tI\t152\tV\t97.6\t113\t476357\t101024430chr1\t476357\tN\n\nchrX\t10138759\tENSCAFT00000018685\tENSCAFP00000017310\tC\t760\tR\t89.5\t50\t480841\t10138759chrX\t480841\tN\n\nchr1\t101561323\tENSCAFT00000003560\tENSCAFP00000003298\tA\t715\tV\t96.6\t80\tU\t101561323chr1\tU\tN\n\nchr1\t101566210\tENSCAFT00000003560\tENSCAFP00000003298\tF\t588\tL\t92.6\t255\tU\t101566210chr1\tU\tN\n", "update_time": "2013-06-17 05:08:52.157040", "name": "(Method 2) Get Pathways on non-synonymous SNPs in genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Get_Pathways_on_non-synonymous_SNPs_in_genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 05:08:01.659697", "hid": 61, "parent_id": null, "annotation": "None", "blurb": "2,224 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 2224, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "str"], "columns": 13}}, {"info": "", "peek": "1\t0.33\t1\t0.18\tcfa00300=Lysine biosynthesis\n\n12\t0.29\t2\t0.0000052\tcfa02010=ABC transporters\n\n5\t0.26\t3\t0.0053\tcfa01040=Biosynthesis of unsaturated fatty acids\n\n3\t0.25\t4\t0.035\tcfa03450=Non-homologous end-joining\n\n2\t0.25\t4\t0.085\tcfa00072=Synthesis and degradation of ketone bodies\n\n1\t0.25\t4\t0.23\tcfa00061=Fatty acid biosynthesis\n", "update_time": "2013-06-17 05:12:20.498407", "name": "(Method 2) Rank Pathways on non-synonymous SNPs in genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Pathways_on_non-synonymous_SNPs_in_genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 05:11:12.658022", "hid": 62, "parent_id": null, "annotation": "None", "blurb": "241 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 241, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 1.60% of 10458 valid lines (10458 total lines).\r\n", "peek": "4\t1\t1\t0.000099\tmuscle alpha-actinin binding\n\n2\t1\t1\t0.010\tspectrin\n\n2\t1\t1\t0.010\tsodium-dependent phosphate transport\n\n2\t1\t1\t0.010\tsecretion\n\n2\t1\t1\t0.010\tryanodine-sensitive calcium-release channel activity\n\n2\t1\t1\t0.010\tpulmonary artery morphogenesis\n", "update_time": "2013-06-17 05:15:10.767020", "name": "(Method 2) Rank GO terms on non-synonymous SNPs in genes with fixed different alleles in Polar and ABC-GRZ bears (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_GO_terms_on_non-synonymous_SNPs_in_genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:14:49.593037", "hid": 63, "parent_id": null, "annotation": "None", "blurb": "167 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 167, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 12.03% of 241 valid lines (241 total lines).\r\n", "peek": "12\t0.29\t2\t0.0000052\tcfa02010=ABC transporters\n\n5\t0.26\t3\t0.0053\tcfa01040=Biosynthesis of unsaturated fatty acids\n\n3\t0.25\t4\t0.035\tcfa03450=Non-homologous end-joining\n\n4\t0.24\t7\t0.019\tcfa04614=Renin-angiotensin system\n\n17\t0.22\t8\t0.0000067\tcfa04512=ECM-receptor interaction\n\n10\t0.18\t10\t0.0020\tcfa00562=Inositol phosphate metabolism\n", "update_time": "2013-06-17 05:15:57.750156", "name": "(Method 2) Rank Pathways on non-synonymous SNPs in genes with fixed different alleles in Polar and ABC-GRZ bears (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Pathways_on_non-synonymous_SNPs_in_genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:15:35.540072", "hid": 64, "parent_id": null, "annotation": "None", "blurb": "29 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 29, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "uploaded interval file", "peek": "chr28\t10009188\tENSCAFT00000012011\tENSCAFP00000011137\tE\t427\tD\t100.0\t87\t477769\t10009188chr28\t477769\tN\tbening\n\nchr28\t10010785\tENSCAFT00000012011\tENSCAFP00000011137\tQ\t477\tQ\t95.2\t181\t477769\t10010785chr28\t477769\tN\tbening\n\nchr28\t10011559\tENSCAFT00000012011\tENSCAFP00000011137\tA\t525\tA\t95.7\t198\t477769\t10011559chr28\t477769\tN\tbening\n\nchr27\t10012030\tENSCAFT00000014611\tENSCAFP00000013515\tG\t212\tG\t93.0\t152\t486591\t10012030chr27\t486591\tcfa04670=Leukocyte transendothelial migration.cfa04720=Long-term potentiation\tbening\n\nchr27\t10018996\tENSCAFT00000014611\tENSCAFP00000013515\tC\t556\tC\t85.7\t77\t486591\t10018996chr27\t486591\tcfa04670=Leukocyte transendothelial migration.cfa04720=Long-term potentiation\tbening\n\nchr27\t10022079\tENSCAFT00000014611\tENSCAFP00000013515\tL\t695\tL\t100.0\t175\t486591\t10022079chr27\t486591\tcfa04670=Leukocyte transendothelial migration.cfa04720=Long-term potentiation\tbening\n", "update_time": "2013-06-17 05:20:28.923533", "name": "(Method 2) Polyphen prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Polyphen_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-17 05:20:28.807175", "hid": 65, "parent_id": null, "annotation": null, "blurb": "7,635 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 7635, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "str", "str"], "columns": 14}}, {"info": "Filtering with c14.find('damaging')>-1, \r\nkept 7.58% of 7635 valid lines (7635 total lines).\r\n", "peek": "chr1\t101020385\tENSCAFT00000003500\tENSCAFP00000003246\tC\t523\tR\t86.7\t1079\t476357\t101020385chr1\t476357\tN\tdamaging\n\nchr1\t102877196\tENSCAFT00000003748\tENSCAFP00000003466\tT\t210\tA\t90.3\t83\tU\t102877196chr1\tU\tN\tdamaging\n\nchr30\t10462254\tENSCAFT00000014399\tENSCAFP00000013316\tQ\t1156\tE\t88.1\t184\t100856190\t10462254chr30\t487491\tcfa00562=Inositol phosphate metabolism.cfa01100=Metabolic pathways.cfa04020=Calcium signaling pathway.cfa04062=Chemokine signaling pathway.cfa04070=Phosph\natidylinositol signaling system.cfa04270=Vascular smooth muscle contraction.cfa04310=Wnt signaling pathway.cfa04540=Gap junction.cfa04720=Long-term potentiation.cfa04724=Glutamatergic synapse.cfa04725=Cholinergic synapse.cfa04728=Dopaminergic synapse.cfa04\n730=Long-term depression.cfa04912=GnRH signaling pathway.cfa04916=Melanogenesis.cfa04961=Endocrine and other factor-regulated calcium reabsorption.cfa04970=Salivary secretion.cfa04971=Gastric acid secretion.cfa04972=Pancreatic secretion.cfa05010=Alzheimer'\ns disease.cfa05016=Huntington's disease.cfa05142=Chagas disease (American trypanosomiasis).cfa05143=African trypanosomiasis.cfa05146=Amoebiasis\tdamaging\n", "update_time": "2013-06-17 05:21:54.324021", "name": "(Method 2) Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:21:25.082350", "hid": 66, "parent_id": null, "annotation": "None", "blurb": "579 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 579, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "str", "str"], "columns": 14}}, {"info": "", "peek": "2\t1\t1\t0.00083\tendoplasmic reticulum tubular network organization\n\n2\t1\t1\t0.00083\tATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity\n\n1\t1\t1\t0.029\tzymogen granule membrane\n\n1\t1\t1\t0.029\tvitelline membrane formation\n\n1\t1\t1\t0.029\tvitamin metabolic process\n\n1\t1\t1\t0.029\tvitamin E biosynthetic process\n", "update_time": "2013-06-17 05:24:04.750668", "name": "(Method 2) Rank GO terms Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_GO_terms_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 05:22:50.958855", "hid": 67, "parent_id": null, "annotation": "None", "blurb": "10,458 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 10458, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 1.59% of 10458 valid lines (10458 total lines).\r\n", "peek": "2\t1\t1\t0.00083\tendoplasmic reticulum tubular network organization\n\n2\t1\t1\t0.00083\tATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity\n\n1\t1\t1\t0.029\tzymogen granule membrane\n\n1\t1\t1\t0.029\tvitelline membrane formation\n\n1\t1\t1\t0.029\tvitamin metabolic process\n\n1\t1\t1\t0.029\tvitamin E biosynthetic process\n", "update_time": "2013-06-17 05:25:40.609246", "name": "(Method 2) Rank GO terms Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_GO_terms_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:25:13.302847", "hid": 68, "parent_id": null, "annotation": "None", "blurb": "166 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 166, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "chr1\t101020385\tENSCAFT00000003500\tENSCAFP00000003246\tC\t523\tR\t86.7\t1079\t476357\t101020385chr1\t476357\tN\tdamaging\t476357\tN\n\nchr1\t102877196\tENSCAFT00000003748\tENSCAFP00000003466\tT\t210\tA\t90.3\t83\tU\t102877196chr1\tU\tN\tdamaging\tU\tN\n\nchr30\t10462254\tENSCAFT00000014399\tENSCAFP00000013316\tQ\t1156\tE\t88.1\t184\t100856190\t10462254chr30\t487491\tcfa00562=Inositol phosphate metabolism.cfa01100=Metabolic pathways.cfa04020=Calcium signaling pathway.cfa04062=Chemokine signaling pathway.cfa04070=Phosph\natidylinositol signaling system.cfa04270=Vascular smooth muscle contraction.cfa04310=Wnt signaling pathway.cfa04540=Gap junction.cfa04720=Long-term potentiation.cfa04724=Glutamatergic synapse.cfa04725=Cholinergic synapse.cfa04728=Dopaminergic synapse.cfa04\n730=Long-term depression.cfa04912=GnRH signaling pathway.cfa04916=Melanogenesis.cfa04961=Endocrine and other factor-regulated calcium reabsorption.cfa04970=Salivary secretion.cfa04971=Gastric acid secretion.cfa04972=Pancreatic secretion.cfa05010=Alzheimer'\ns disease.cfa05016=Huntington's disease.cfa05142=Chagas disease (American trypanosomiasis).cfa05143=African trypanosomiasis.cfa05146=Amoebiasis\tdamaging\t487491\tcfa00562=Inositol phosphate metabolism.cfa01100=Metabolic pathways.cfa04020=Calcium signaling pa", "update_time": "2013-06-17 05:26:48.455172", "name": "(Method 2) Get Pathways on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Get_Pathways_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 05:26:25.307145", "hid": 69, "parent_id": null, "annotation": "None", "blurb": "579 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 579, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "str", "str", "str", "str"], "columns": 16}}, {"info": "", "peek": "2\t0.15\t1\t0.022\tcfa00900=Terpenoid backbone biosynthesis\n\n1\t0.12\t2\t0.13\tcfa00072=Synthesis and degradation of ketone bodies\n\n1\t0.11\t3\t0.15\tcfa00062=Fatty acid elongation\n\n6\t0.091\t4\t0.0012\tcfa04920=Adipocytokine signaling pathway\n\n5\t0.091\t4\t0.0031\tcfa00562=Inositol phosphate metabolism\n\n1\t0.091\t4\t0.18\tcfa00790=Folate biosynthesis\n", "update_time": "2013-06-17 05:28:05.203276", "name": "(Method 2) Rank Pathways on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Pathways_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 05:27:34.147914", "hid": 70, "parent_id": null, "annotation": "None", "blurb": "241 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 241, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 4.15% of 241 valid lines (241 total lines).\r\n", "peek": "2\t0.15\t1\t0.022\tcfa00900=Terpenoid backbone biosynthesis\n\n6\t0.091\t4\t0.0012\tcfa04920=Adipocytokine signaling pathway\n\n5\t0.091\t4\t0.0031\tcfa00562=Inositol phosphate metabolism\n\n3\t0.081\t9\t0.029\tcfa04973=Carbohydrate digestion and absorption\n\n3\t0.073\t12\t0.037\tcfa02010=ABC transporters\n\n3\t0.068\t13\t0.045\tcfa00071=Fatty acid metabolism\n", "update_time": "2013-06-17 05:29:35.354687", "name": "(Method 2) Rank Pathways on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Pathways_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:29:15.809575", "hid": 71, "parent_id": null, "annotation": "None", "blurb": "10 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 10, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "chr1\t101020385\tENSCAFT00000003500\tENSCAFP00000003246\tC\t523\tR\t86.7\t1079\t476357\t101020385chr1\t476357\tN\tdamaging\t101020385chr1\n\nchr1\t102877196\tENSCAFT00000003748\tENSCAFP00000003466\tT\t210\tA\t90.3\t83\tU\t102877196chr1\tU\tN\tdamaging\t102877196chr1\n\nchr30\t10462254\tENSCAFT00000014399\tENSCAFP00000013316\tQ\t1156\tE\t88.1\t184\t100856190\t10462254chr30\t487491\tcfa00562=Inositol phosphate metabolism.cfa01100=Metabolic pathways.cfa04020=Calcium signaling pathway.cfa04062=Chemokine signaling pathway.cfa04070=Phosph\natidylinositol signaling system.cfa04270=Vascular smooth muscle contraction.cfa04310=Wnt signaling pathway.cfa04540=Gap junction.cfa04720=Long-term potentiation.cfa04724=Glutamatergic synapse.cfa04725=Cholinergic synapse.cfa04728=Dopaminergic synapse.cfa04\n730=Long-term depression.cfa04912=GnRH signaling pathway.cfa04916=Melanogenesis.cfa04961=Endocrine and other factor-regulated calcium reabsorption.cfa04970=Salivary secretion.cfa04971=Gastric acid secretion.cfa04972=Pancreatic secretion.cfa05010=Alzheimer'\ns disease.cfa05016=Huntington's disease.cfa05142=Chagas disease (American trypanosomiasis).cfa05143=African trypanosomiasis.cfa05146=Amoebiasis\tdamaging\t10462254chr30\n", "update_time": "2013-06-17 05:39:29.327590", "name": "(Method 2) Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:38:34.525306", "hid": 72, "parent_id": null, "annotation": "None", "blurb": "579 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 579, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "str", "str", "str"], "columns": 15}}, {"info": "join (GNU coreutils) 8.4\r\nCopyright (C) 2010 Free Software Foundation, Inc.\r\nLicense GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.\r\nThis is free software: you are free to change and redistribute it.\r\nThere is NO WARRANTY, to the e", "peek": "chr1\t101020385\tENSCAFT00000003500\tENSCAFP00000003246\tC\t523\tR\t86.7\t1079\t476357\t101020385chr1\t476357\tN\tdamaging\t101020385chr1\n\nchr30\t10462254\tENSCAFT00000014399\tENSCAFP00000013316\tQ\t1156\tE\t88.1\t184\t100856190\t10462254chr30\t487491\tcfa00562=Inositol phosphate metabolism.cfa01100=Metabolic pathways.cfa04020=Calcium signaling pathway.cfa04062=Chemokine signaling pathway.cfa04070=Phosph\natidylinositol signaling system.cfa04270=Vascular smooth muscle contraction.cfa04310=Wnt signaling pathway.cfa04540=Gap junction.cfa04720=Long-term potentiation.cfa04724=Glutamatergic synapse.cfa04725=Cholinergic synapse.cfa04728=Dopaminergic synapse.cfa04\n730=Long-term depression.cfa04912=GnRH signaling pathway.cfa04916=Melanogenesis.cfa04961=Endocrine and other factor-regulated calcium reabsorption.cfa04970=Salivary secretion.cfa04971=Gastric acid secretion.cfa04972=Pancreatic secretion.cfa05010=Alzheimer'\ns disease.cfa05016=Huntington's disease.cfa05142=Chagas disease (American trypanosomiasis).cfa05143=African trypanosomiasis.cfa05146=Amoebiasis\tdamaging\t10462254chr30\n\nchr30\t10717543\tENSCAFT00000014566\tENSCAFP00000013474\tD\t59\tG\t94.2\t243\t608471\t10717543chr30\t608471\tN\tdamaging\t10717543chr30\n", "update_time": "2013-06-17 05:42:56.314522", "name": "(Method 2) Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in Polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_Polar.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:42:35.578819", "hid": 73, "parent_id": null, "annotation": "None", "blurb": "409 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 409, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "str", "str", "str"], "columns": 15}}, {"info": "join (GNU coreutils) 8.4\r\nCopyright (C) 2010 Free Software Foundation, Inc.\r\nLicense GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.\r\nThis is free software: you are free to change and redistribute it.\r\nThere is NO WARRANTY, to the e", "peek": "chr1\t102877196\tENSCAFT00000003748\tENSCAFP00000003466\tT\t210\tA\t90.3\t83\tU\t102877196chr1\tU\tN\tdamaging\t102877196chr1\n\nchr13\t10623946\tENSCAFT00000001063\tENSCAFP00000000975\tR\t21\tC\t92.3\t614\t100856177\t10623946chr13\t481999\tN\tdamaging\t10623946chr13\n\nchr1\t112367856\tENSCAFT00000006973\tENSCAFP00000006455\tG\t461\tS\t92.3\t252\t476429\t112367856chr1\t476429\tN\tdamaging\t112367856chr1\n\nchr1\t112824747\tENSCAFT00000007105\tENSCAFP00000006579\tE\t584\tG\t95.2\t117\t476434\t112824747chr1\t476434\tN\tdamaging\t112824747chr1\n\nchr1\t115898804\tENSCAFT00000008166\tENSCAFP00000007564\tG\t103\tA\t94.5\t152\t476453\t115898804chr1\t476453\tN\tdamaging\t115898804chr1\n\nchr28\t11855084\tENSCAFT00000013202\tENSCAFP00000012217\tI\t1047\tM\t93.7\t623\t100686806\t11855084chr28\tU\tN\tdamaging\t11855084chr28\n", "update_time": "2013-06-17 05:43:51.724659", "name": "(Method 2) Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_ABC-GRZ.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:43:31.640891", "hid": 74, "parent_id": null, "annotation": "None", "blurb": "170 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 170, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "str", "str", "str"], "columns": 15}}, {"info": "", "peek": "2\t1\t1\t0.00045\tendoplasmic reticulum tubular network organization\n\n1\t1\t1\t0.021\tzymogen granule membrane\n\n1\t1\t1\t0.021\tvitelline membrane formation\n\n1\t1\t1\t0.021\tvitamin metabolic process\n\n1\t1\t1\t0.021\tvitamin E biosynthetic process\n\n1\t1\t1\t0.021\ttransforming growth factor beta receptor, cytoplasmic mediator activity\n", "update_time": "2013-06-17 05:47:10.237425", "name": "(Method 2) Rank Terms on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in Polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Terms_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_Polar.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 05:46:49.279463", "hid": 75, "parent_id": null, "annotation": "None", "blurb": "10,458 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 10458, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "1\t1\t1\t0.0092\tsour taste receptor activity\n\n1\t1\t1\t0.0092\trenin secretion into blood stream\n\n1\t1\t1\t0.0092\tpositive regulation of synaptic transmission, cholinergic\n\n1\t1\t1\t0.0092\tnitric oxide metabolic process\n\n1\t1\t1\t0.0092\tlamellipodium morphogenesis\n\n1\t1\t1\t0.0092\tintegrin biosynthetic process\n", "update_time": "2013-06-17 05:47:59.289763", "name": "(Method 2) Rank Terms on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Terms_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_ABC-GRZ.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 05:47:36.509138", "hid": 76, "parent_id": null, "annotation": "None", "blurb": "10,458 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 10458, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 1.91% of 10458 valid lines (10458 total lines).\r\n", "peek": "2\t1\t1\t0.00045\tendoplasmic reticulum tubular network organization\n\n1\t1\t1\t0.021\tzymogen granule membrane\n\n1\t1\t1\t0.021\tvitelline membrane formation\n\n1\t1\t1\t0.021\tvitamin metabolic process\n\n1\t1\t1\t0.021\tvitamin E biosynthetic process\n\n1\t1\t1\t0.021\ttransforming growth factor beta receptor, cytoplasmic mediator activity\n", "update_time": "2013-06-17 05:50:04.347339", "name": "(Method 2) Rank Terms on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in Polar (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Terms_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_Polar_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:49:38.469155", "hid": 77, "parent_id": null, "annotation": "None", "blurb": "200 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 200, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 1.31% of 10458 valid lines (10458 total lines).\r\n", "peek": "1\t1\t1\t0.0092\tsour taste receptor activity\n\n1\t1\t1\t0.0092\trenin secretion into blood stream\n\n1\t1\t1\t0.0092\tpositive regulation of synaptic transmission, cholinergic\n\n1\t1\t1\t0.0092\tnitric oxide metabolic process\n\n1\t1\t1\t0.0092\tlamellipodium morphogenesis\n\n1\t1\t1\t0.0092\tintegrin biosynthetic process\n", "update_time": "2013-06-17 05:50:52.488561", "name": "(Method 2) Rank Terms on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in ABC-GRZ (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Terms_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_ABC-GRZ_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:50:31.067241", "hid": 78, "parent_id": null, "annotation": "None", "blurb": "137 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 137, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with (c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1) and c5.find('oxidative')==-1, \r\nkept 3.00% of 200 valid lines (200 total lines).\r\n", "peek": "1\t1\t1\t0.021\tnitric oxide production involved in inflammatory response\n\n1\t1\t1\t0.021\tnitric oxide metabolic process\n\n1\t1\t1\t0.021\theme-transporting ATPase activity\n\n1\t0.5\t2\t0.042\tnitric-oxide synthase activity\n\n1\t0.5\t2\t0.042\tATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity\n\n3\t0.077\t29\t0.050\toxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen\n", "update_time": "2013-06-17 05:58:00.184646", "name": "(Method 2) Rank Terms on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in Polar (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Terms_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_Polar_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:57:46.323221", "hid": 81, "parent_id": null, "annotation": "None", "blurb": "6 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 6, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with (c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1) and c5.find('oxidative')==-1, \r\nkept 5.11% of 137 valid lines (137 total lines).\r\n", "peek": "1\t1\t1\t0.0092\tnitric oxide metabolic process\n\n1\t0.5\t2\t0.018\textrinsic to mitochondrial inner membrane\n\n1\t0.5\t2\t0.018\tATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity\n\n1\t0.33\t3\t0.027\tmitochondrial translation\n\n1\t0.33\t3\t0.027\tmitochondrial part\n\n1\t0.25\t4\t0.036\tpositive regulation of nitric-oxide synthase biosynthetic process\n", "update_time": "2013-06-17 05:58:59.640569", "name": "(Method 2) Rank Terms on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in ABC-GRZ (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Terms_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_ABC-GRZ_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:58:42.767480", "hid": 82, "parent_id": null, "annotation": "None", "blurb": "7 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 7, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "chr1\t101020385\tENSCAFT00000003500\tENSCAFP00000003246\tC\t523\tR\t86.7\t1079\t476357\t101020385chr1\t476357\tN\tdamaging\t101020385chr1\t476357\tN\n\nchr30\t10462254\tENSCAFT00000014399\tENSCAFP00000013316\tQ\t1156\tE\t88.1\t184\t100856190\t10462254chr30\t487491\tcfa00562=Inositol phosphate metabolism.cfa01100=Metabolic pathways.cfa04020=Calcium signaling pathway.cfa04062=Chemokine signaling pathway.cfa04070=Phosph\natidylinositol signaling system.cfa04270=Vascular smooth muscle contraction.cfa04310=Wnt signaling pathway.cfa04540=Gap junction.cfa04720=Long-term potentiation.cfa04724=Glutamatergic synapse.cfa04725=Cholinergic synapse.cfa04728=Dopaminergic synapse.cfa04\n730=Long-term depression.cfa04912=GnRH signaling pathway.cfa04916=Melanogenesis.cfa04961=Endocrine and other factor-regulated calcium reabsorption.cfa04970=Salivary secretion.cfa04971=Gastric acid secretion.cfa04972=Pancreatic secretion.cfa05010=Alzheimer'\ns disease.cfa05016=Huntington's disease.cfa05142=Chagas disease (American trypanosomiasis).cfa05143=African trypanosomiasis.cfa05146=Amoebiasis\tdamaging\t10462254chr30\t487491\tcfa00562=Inositol phosphate metabolism.cfa01100=Metabolic pathways.cfa04020=Calciu\nm signaling pathway.cfa04062=Chemokine signaling pathway.cfa04070=Phosphatidylinositol signaling system.cfa04270=Vascular smooth muscle contraction.cfa04310=Wnt signaling pathway.cfa04540=Gap junction.cfa04720=Long-term potentiation.cfa04724=Glutamatergic ", "update_time": "2013-06-17 06:04:14.775219", "name": "(Method 2) Get Pathways on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in Polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Get_Pathways_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_Polar.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 06:03:48.581438", "hid": 83, "parent_id": null, "annotation": "None", "blurb": "409 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 409, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "str", "str", "str", "str", "str"], "columns": 17}}, {"info": "", "peek": "chr1\t102877196\tENSCAFT00000003748\tENSCAFP00000003466\tT\t210\tA\t90.3\t83\tU\t102877196chr1\tU\tN\tdamaging\t102877196chr1\tU\tN\n\nchr13\t10623946\tENSCAFT00000001063\tENSCAFP00000000975\tR\t21\tC\t92.3\t614\t100856177\t10623946chr13\t481999\tN\tdamaging\t10623946chr13\t481999\tN\n\nchr1\t112367856\tENSCAFT00000006973\tENSCAFP00000006455\tG\t461\tS\t92.3\t252\t476429\t112367856chr1\t476429\tN\tdamaging\t112367856chr1\t476429\tN\n\nchr1\t112824747\tENSCAFT00000007105\tENSCAFP00000006579\tE\t584\tG\t95.2\t117\t476434\t112824747chr1\t476434\tN\tdamaging\t112824747chr1\t476434\tN\n\nchr1\t115898804\tENSCAFT00000008166\tENSCAFP00000007564\tG\t103\tA\t94.5\t152\t476453\t115898804chr1\t476453\tN\tdamaging\t115898804chr1\t476453\tN\n\nchr28\t11855084\tENSCAFT00000013202\tENSCAFP00000012217\tI\t1047\tM\t93.7\t623\t100686806\t11855084chr28\tU\tN\tdamaging\t11855084chr28\tU\tN\n", "update_time": "2013-06-17 06:04:53.223853", "name": "(Method 2) Get Pathways on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Get_Pathways_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_ABC-GRZ.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 06:04:37.342518", "hid": 84, "parent_id": null, "annotation": "None", "blurb": "170 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 170, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "str", "str", "str", "str", "str"], "columns": 17}}, {"info": "", "peek": "1\t0.11\t1\t0.11\tcfa00062=Fatty acid elongation\n\n1\t0.091\t2\t0.14\tcfa00790=Folate biosynthesis\n\n1\t0.083\t3\t0.15\tcfa00740=Riboflavin metabolism\n\n3\t0.081\t4\t0.013\tcfa04973=Carbohydrate digestion and absorption\n\n2\t0.08\t5\t0.043\tcfa00534=Glycosaminoglycan biosynthesis - heparan sulfate\n\n2\t0.077\t6\t0.046\tcfa00052=Galactose metabolism\n", "update_time": "2013-06-17 06:08:17.653018", "name": "(Method 2) Rank Pathways on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in Polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Pathways_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_Polar.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 06:06:14.359373", "hid": 85, "parent_id": null, "annotation": "None", "blurb": "241 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 241, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 3.73% of 241 valid lines (241 total lines).\r\n", "peek": "3\t0.081\t4\t0.013\tcfa04973=Carbohydrate digestion and absorption\n\n2\t0.08\t5\t0.043\tcfa00534=Glycosaminoglycan biosynthesis - heparan sulfate\n\n2\t0.077\t6\t0.046\tcfa00052=Galactose metabolism\n\n3\t0.059\t8\t0.030\tcfa04340=Hedgehog signaling pathway\n\n3\t0.055\t11\t0.037\tcfa00562=Inositol phosphate metabolism\n\n3\t0.054\t12\t0.038\tcfa00330=Arginine and proline metabolism\n", "update_time": "2013-06-17 06:07:29.087942", "name": "(Method 2) Rank Pathways on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in Polar (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Pathways_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_Polar_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 06:07:03.775580", "hid": 86, "parent_id": null, "annotation": "None", "blurb": "9 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 9, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "2\t0.15\t1\t0.0020\tcfa00900=Terpenoid backbone biosynthesis\n\n1\t0.12\t2\t0.040\tcfa00072=Synthesis and degradation of ketone bodies\n\n1\t0.083\t3\t0.059\tcfa03450=Non-homologous end-joining\n\n1\t0.059\t4\t0.083\tcfa04614=Renin-angiotensin system\n\n3\t0.045\t5\t0.0049\tcfa04920=Adipocytokine signaling pathway\n\n2\t0.043\t6\t0.024\tcfa00520=Amino sugar and nucleotide sugar metabolism\n", "update_time": "2013-06-17 06:09:04.328913", "name": "(Method 2) Rank Pathways on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Pathways_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_ABC-GRZ.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 06:08:45.512516", "hid": 87, "parent_id": null, "annotation": "None", "blurb": "241 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 241, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 2.49% of 241 valid lines (241 total lines).\r\n", "peek": "2\t0.15\t1\t0.0020\tcfa00900=Terpenoid backbone biosynthesis\n\n1\t0.12\t2\t0.040\tcfa00072=Synthesis and degradation of ketone bodies\n\n3\t0.045\t5\t0.0049\tcfa04920=Adipocytokine signaling pathway\n\n2\t0.043\t6\t0.024\tcfa00520=Amino sugar and nucleotide sugar metabolism\n\n2\t0.036\t11\t0.032\tcfa00562=Inositol phosphate metabolism\n\n2\t0.035\t13\t0.035\tcfa04622=RIG-I-like receptor signaling pathway\n", "update_time": "2013-06-17 06:09:53.467960", "name": "(Method 2) Rank Pathways on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in ABC-GRZ (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Pathways_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_ABC-GRZ_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 06:09:34.976395", "hid": 88, "parent_id": null, "annotation": "None", "blurb": "6 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 6, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "uploaded tabular file", "peek": "ENSEMBL code\tdn_ABC+GRZ\tds_ABC+GRZ\tdn/ds_ABC+GRZ\tt-val_ABC+GRZ\tp_ABC+GRZ\tdn_black\tds_black\tdn/ds_black\tt-val_black\tp_black\tdn_polar\tds_polar\tdn/ds_polar\tt-val_polar\tp_polar\n\nENSCAFT00000000012\t1e-15\t0.00170357824524\t5.86999747618e-13\t-1.99744563096\t0.0457767420292\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.00170357824524\t5.86999747618e-13\t-1.99744563096\t0.0457767420292\n\nENSCAFT00000000013\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.00136518809025\t7.32499797749e-13\t-1.9618018482\t0.0497855068521\n\nENSCAFT00000000014\t1e-15\t0.00125287145443\t7.98166481055e-13\t-2.04128306758\t0.0412226895088\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\n\nENSCAFT00000000024\t1e-15\t0.00532861921781\t1.87665877242e-13\t-2.01757353633\t0.0436356642908\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\n\nENSCAFT00000000028\t1e-15\t0.00237969528043\t4.20221869675e-13\t-3.6092013682\t0.000307140919555\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.00317460791447\t3.14999529688e-13\t-4.16699176528\t3.08645285187e-05\n", "update_time": "2013-06-17 23:49:40.126290", "name": "(Method 3) coding SNPs fixed Polar and ABC-GRZ KaKs", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3)_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs.tabular", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-17 23:45:14.841654", "hid": 89, "parent_id": null, "annotation": "None", "blurb": "4,154 lines", "metadata": {"column_names": null, "comment_lines": "1", "dbkey": "canFam2", "data_lines": 4154, "column_types": ["str", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float"], "columns": 16}}, {"info": "Filtering with c14>1.0, \r\nkept 17.36% of 4154 valid lines (4154 total lines).\r\nSkipped 1 invalid line(s) starting at line #1: \"ENSEMBL code\tdn_ABC+GRZ\tds_ABC+GRZ\tdn/ds_ABC+GRZ\tt-val_ABC+GRZ\tp_ABC+GRZ\tdn_black\tds_black\tdn/ds_black\tt-val_black\tp_black\tdn_po", "peek": "ENSCAFT00000000145\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.00131550132389\t1e-15\t1.31550132389e+12\t1.14734428626\t0.251239919815\n\nENSCAFT00000000160\t1e-15\t0.0018668335712\t5.35666390098e-13\t-1.9653816263\t0.0493700596902\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.0013049155097\t1e-15\t1.3049155097e+12\t1.6436426387\t0.100250536931\n\nENSCAFT00000000338\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.000765696850581\t1e-15\t7.65696850581e+11\t1.15481076415\t0.248168384725\n\nENSCAFT00000000358\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.000572792390611\t1e-15\t5.72792390611e+11\t1.16257830489\t0.245000965471\n\nENSCAFT00000000386\t0.000864428852358\t0.00234833851348\t0.368102318893\t-1.04093091214\t0.297907883956\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.00086405539511\t1e-15\t8.6405539511e+11\t1.16939360546\t0.242245458491\n\nENSCAFT00000000403\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.000831485672749\t1e-15\t8.31485672749e+11\t1.13843723692\t0.254938257162\n", "update_time": "2013-06-17 23:49:12.364535", "name": "(Method 3A) coding SNPs fixed Polar and ABC-GRZ KaKs>1 in polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_polar.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 23:48:08.760619", "hid": 90, "parent_id": null, "annotation": "None", "blurb": "721 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 721, "column_types": ["str", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float"], "columns": 16}}, {"info": "Filtering with c4>1.0, \r\nkept 10.28% of 4154 valid lines (4154 total lines).\r\nSkipped 1 invalid line(s) starting at line #1: \"ENSEMBL code\tdn_ABC+GRZ\tds_ABC+GRZ\tdn/ds_ABC+GRZ\tt-val_ABC+GRZ\tp_ABC+GRZ\tdn_black\tds_black\tdn/ds_black\tt-val_black\tp_black\tdn_pol", "peek": "ENSCAFT00000000131\t0.000546697062932\t1e-15\t5.46697062932e+11\t1.14156023122\t0.253637270251\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\n\nENSCAFT00000000213\t0.00216606648756\t1e-15\t2.16606648756e+12\t1.16133518909\t0.245505925784\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.00644472279212\t1.55165711894e-13\t-1.99890791877\t0.0456182932232\n\nENSCAFT00000000220\t0.00022680022853\t1e-15\t2.2680022853e+11\t1.14758743611\t0.251139203957\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.00143163966162\t6.98499787905e-13\t-2.88150368309\t0.00395782316588\n\nENSCAFT00000000295\t9.5797675441e-05\t1e-15\t95797675441.0\t1.14157879781\t0.253629585688\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.000316539176422\t3.15916661976e-12\t-2.07488603452\t0.0379970499696\n\nENSCAFT00000000337\t0.00168800183788\t1e-15\t1.68800183788e+12\t1.57550990071\t0.115139313552\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\n\nENSCAFT00000000400\t0.00108303267918\t1e-15\t1.08303267918e+12\t1.17308396069\t0.240762577086\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\n", "update_time": "2013-06-17 23:50:20.698514", "name": "(Method 3A) coding SNPs fixed Polar and ABC-GRZ KaKs>1 in ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_ABC-GRZ.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 23:50:07.199378", "hid": 91, "parent_id": null, "annotation": "None", "blurb": "427 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 427, "column_types": ["str", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float"], "columns": 16}}, {"info": "None", "peek": "2\t1\t1\t0.0019\tpeptidyl-lysine trimethylation\n\n2\t1\t1\t0.0019\tcellular response to potassium ion\n\n1\t1\t1\t0.044\tzymogen granule membrane\n\n1\t1\t1\t0.044\tvitelline membrane formation\n\n1\t1\t1\t0.044\tvitamin metabolic process\n\n1\t1\t1\t0.044\tvitamin E biosynthetic process\n", "update_time": "2013-06-17 23:52:11.570658", "name": "(Method 3A) Rank Terms on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Terms_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_polar.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 23:51:33.014667", "hid": 92, "parent_id": null, "annotation": "None", "blurb": "10,458 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 10458, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 2.29% of 10458 valid lines (10458 total lines).\r\n", "peek": "2\t1\t1\t0.0019\tpeptidyl-lysine trimethylation\n\n2\t1\t1\t0.0019\tcellular response to potassium ion\n\n1\t1\t1\t0.044\tzymogen granule membrane\n\n1\t1\t1\t0.044\tvitelline membrane formation\n\n1\t1\t1\t0.044\tvitamin metabolic process\n\n1\t1\t1\t0.044\tvitamin E biosynthetic process\n", "update_time": "2013-06-17 23:53:11.113042", "name": "(Method 3A) Rank Terms on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in polar (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Terms_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_polar_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 23:52:52.075361", "hid": 93, "parent_id": null, "annotation": "None", "blurb": "240 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 240, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "2\t1\t1\t0.00059\tnuclear migration along microfilament\n\n1\t1\t1\t0.024\ttyrosine 3-monooxygenase activity\n\n1\t1\t1\t0.024\ttRNA aminoacylation for mitochondrial protein translation\n\n1\t1\t1\t0.024\tsteroid hormone receptor complex assembly\n\n1\t1\t1\t0.024\tspindle assembly checkpoint\n\n1\t1\t1\t0.024\tsour taste receptor activity\n", "update_time": "2013-06-17 23:55:31.592210", "name": "(Method 3A) Rank Terms on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Terms_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_ABC-GRZ.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 23:55:10.546016", "hid": 94, "parent_id": null, "annotation": "None", "blurb": "10,458 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 10458, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 2.62% of 10458 valid lines (10458 total lines).\r\n", "peek": "2\t1\t1\t0.00059\tnuclear migration along microfilament\n\n1\t1\t1\t0.024\ttyrosine 3-monooxygenase activity\n\n1\t1\t1\t0.024\ttRNA aminoacylation for mitochondrial protein translation\n\n1\t1\t1\t0.024\tsteroid hormone receptor complex assembly\n\n1\t1\t1\t0.024\tspindle assembly checkpoint\n\n1\t1\t1\t0.024\tsour taste receptor activity\n", "update_time": "2013-06-17 23:56:06.817026", "name": "(Method 3A) Rank Terms on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in ABC-GRZ (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Terms_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_ABC-GRZ_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 23:55:48.279523", "hid": 95, "parent_id": null, "annotation": "None", "blurb": "274 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 274, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "ENSCAFT00000000145\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.00131550132389\t1e-15\t1.31550132389e+12\t1.14734428626\t0.251239919815\t483961\tcfa04080=Neuroactive ligand-receptor interaction\n\nENSCAFT00000000160\t1e-15\t0.0018668335712\t5.35666390098e-13\t-1.9653816263\t0.0493700596902\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.0013049155097\t1e-15\t1.3049155097e+12\t1.6436426387\t0.100250536931\t610160\tN\n\nENSCAFT00000000338\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.000765696850581\t1e-15\t7.65696850581e+11\t1.15481076415\t0.248168384725\t483994\tN\n\nENSCAFT00000000358\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.000572792390611\t1e-15\t5.72792390611e+11\t1.16257830489\t0.245000965471\t474413\tN\n\nENSCAFT00000000386\t0.000864428852358\t0.00234833851348\t0.368102318893\t-1.04093091214\t0.297907883956\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.00086405539511\t1e-15\t8.6405539511e+11\t1.16939360546\t0.242245458491\tU\tN\n\nENSCAFT00000000403\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.000831485672749\t1e-15\t8.31485672749e+11\t1.13843723692\t0.254938257162\t484002\tcfa04060=Cytokine-cytokine receptor interaction.cfa04630=Jak-STAT signaling pathway\n", "update_time": "2013-06-18 00:01:53.008594", "name": "(Method 3A) Get Pathways on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Get_Pathways_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_polar.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 23:57:45.883998", "hid": 96, "parent_id": null, "annotation": "None", "blurb": "721 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 721, "column_types": ["str", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "str", "str"], "columns": 18}}, {"info": "None", "peek": "ENSCAFT00000000131\t0.000546697062932\t1e-15\t5.46697062932e+11\t1.14156023122\t0.253637270251\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t474393\tcfa00561=Glycerolipid metabolism.cfa00564=Glycerophospholipid metabolism.cfa01100=Metabolic pathways.cfa04070=P\nhosphatidylinositol signaling system\n\nENSCAFT00000000213\t0.00216606648756\t1e-15\t2.16606648756e+12\t1.16133518909\t0.245505925784\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.00644472279212\t1.55165711894e-13\t-1.99890791877\t0.0456182932232\t481113\tN\n\nENSCAFT00000000220\t0.00022680022853\t1e-15\t2.2680022853e+11\t1.14758743611\t0.251139203957\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.00143163966162\t6.98499787905e-13\t-2.88150368309\t0.00395782316588\t481116\tN\n\nENSCAFT00000000295\t9.5797675441e-05\t1e-15\t95797675441.0\t1.14157879781\t0.253629585688\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.000316539176422\t3.15916661976e-12\t-2.07488603452\t0.0379970499696\tU\tN\n\nENSCAFT00000000337\t0.00168800183788\t1e-15\t1.68800183788e+12\t1.57550990071\t0.115139313552\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t474638\tN\n", "update_time": "2013-06-18 00:02:32.834266", "name": "(Method 3A) Get Pathways on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Get_Pathways_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_ABC-GRZ.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-18 00:02:15.630008", "hid": 97, "parent_id": null, "annotation": "None", "blurb": "427 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 427, "column_types": ["str", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "str", "str"], "columns": 18}}, {"info": "", "peek": "1\t0.33\t1\t0.076\tcfa00300=Lysine biosynthesis\n\n3\t0.12\t2\t0.030\tcfa03440=Homologous recombination\n\n3\t0.12\t2\t0.027\tcfa00650=Butanoate metabolism\n\n3\t0.12\t2\t0.027\tcfa00534=Glycosaminoglycan biosynthesis - heparan sulfate\n\n2\t0.12\t2\t0.064\tcfa00120=Primary bile acid biosynthesis\n\n1\t0.12\t2\t0.19\tcfa00072=Synthesis and degradation of ketone bodies\n", "update_time": "2013-06-18 00:03:44.054793", "name": "(Method 3A) Rank Pathways on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Pathways_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_polar.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-18 00:03:13.998760", "hid": 98, "parent_id": null, "annotation": "None", "blurb": "241 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 241, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 7.47% of 241 valid lines (241 total lines).\r\n", "peek": "3\t0.12\t2\t0.030\tcfa03440=Homologous recombination\n\n3\t0.12\t2\t0.027\tcfa00650=Butanoate metabolism\n\n3\t0.12\t2\t0.027\tcfa00534=Glycosaminoglycan biosynthesis - heparan sulfate\n\n4\t0.098\t9\t0.022\tcfa02010=ABC transporters\n\n7\t0.097\t10\t0.0028\tcfa03320=PPAR signaling pathway\n\n6\t0.095\t11\t0.0061\tcfa04976=Bile secretion\n", "update_time": "2013-06-18 00:04:15.564385", "name": "(Method 3A) Rank Pathways on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in polar (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Pathways_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_polar_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 00:03:59.406937", "hid": 99, "parent_id": null, "annotation": "None", "blurb": "18 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 18, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "4\t0.21\t1\t0.00022\tcfa01040=Biosynthesis of unsaturated fatty acids\n\n2\t0.15\t2\t0.018\tcfa00900=Terpenoid backbone biosynthesis\n\n2\t0.12\t3\t0.030\tcfa04614=Renin-angiotensin system\n\n1\t0.12\t3\t0.12\tcfa00072=Synthesis and degradation of ketone bodies\n\n3\t0.094\t5\t0.015\tcfa04744=Phototransduction\n\n1\t0.091\t6\t0.16\tcfa00790=Folate biosynthesis\n", "update_time": "2013-06-18 00:05:28.506757", "name": "(Method 3A) Rank Pathways on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Pathways_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_ABC-GRZ.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-18 00:05:03.898433", "hid": 100, "parent_id": null, "annotation": "None", "blurb": "241 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 241, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 6.22% of 241 valid lines (241 total lines).\r\n", "peek": "4\t0.21\t1\t0.00022\tcfa01040=Biosynthesis of unsaturated fatty acids\n\n2\t0.15\t2\t0.018\tcfa00900=Terpenoid backbone biosynthesis\n\n2\t0.12\t3\t0.030\tcfa04614=Renin-angiotensin system\n\n3\t0.094\t5\t0.015\tcfa04744=Phototransduction\n\n6\t0.071\t8\t0.0027\tcfa05410=Hypertrophic cardiomyopathy (HCM)\n\n5\t0.066\t10\t0.0081\tcfa04146=Peroxisome\n", "update_time": "2013-06-18 00:06:01.540550", "name": "(Method 3A) Rank Pathways on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in ABC-GRZ (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Pathways_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_ABC-GRZ_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 00:05:44.860801", "hid": 101, "parent_id": null, "annotation": "None", "blurb": "15 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 15, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with (c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1) and c5.find('oxidative')==-1, \r\nkept 4.58% of 240 valid lines (240 total lines).\r\n", "peek": "1\t1\t1\t0.044\tvacuolar proton-transporting V-type ATPase complex assembly\n\n1\t1\t1\t0.044\toxygen-dependent protoporphyrinogen oxidase activity\n\n1\t1\t1\t0.044\tnitric oxide production involved in inflammatory response\n\n1\t1\t1\t0.044\tnitric oxide metabolic process\n\n1\t1\t1\t0.044\tmitochondrial alpha-ketoglutarate dehydrogenase complex\n\n1\t1\t1\t0.044\tintrinsic to mitochondrial inner membrane\n", "update_time": "2013-06-18 00:07:30.575138", "name": "(Method 3A) Rank Terms on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in polar (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Terms_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_polar_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 00:07:07.757524", "hid": 102, "parent_id": null, "annotation": "None", "blurb": "11 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 11, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with (c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1) and c5.find('oxidative')==-1 and c5.find('oxidase')==-1, \r\nkept 4.74% of 274 valid l", "peek": "1\t1\t1\t0.024\ttRNA aminoacylation for mitochondrial protein translation\n\n1\t1\t1\t0.024\tnitric oxide metabolic process\n\n1\t1\t1\t0.024\tmitochondrial mRNA polyadenylation\n\n1\t1\t1\t0.024\tmitochondrial RNA catabolic process\n\n1\t1\t1\t0.024\tmitochondrial RNA 5'-end processing\n\n1\t1\t1\t0.024\tRNA import into mitochondrion\n", "update_time": "2013-06-18 00:10:30.749080", "name": "(Method 3A) Rank Terms on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in ABC-GRZ (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Terms_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_ABC-GRZ_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 00:10:20.520227", "hid": 104, "parent_id": null, "annotation": "None", "blurb": "13 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 13, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with (c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1) and c5.find('oxidative')==-1, \r\nkept 5.56% of 18 valid lines (18 total lines).\r\n", "peek": "0\t0\t177\t0.035\tcfa00190=Oxidative phosphorylation\n\n\n\n\n\n", "update_time": "2013-06-18 00:24:42.663352", "name": "(Method 3A) Rank Pathways on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in polar (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Pathways_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_polar_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 00:22:48.437207", "hid": 105, "parent_id": null, "annotation": "None", "blurb": "1 line", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 1, "column_types": ["int", "int", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with (c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1) and c5.find('oxidative')==-1, \r\nkept 0.00% of 15 valid lines (15 total lines).\r\n", "peek": "no peek", "update_time": "2013-06-18 00:25:35.470275", "name": "(Method 3A) Rank Pathways on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in ABC-GRZ (statistically significant) associated to cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Pathways_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_ABC-GRZ_(statistically_significant)_associated_to_cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 00:25:11.507490", "hid": 106, "parent_id": null, "annotation": "None", "blurb": "empty", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 15, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "uploaded tabular file", "peek": "polar_ABC+GRZ\tBile secretion\t18\t265298562743.0\t0.435046133126\t89.0\t0.009706903976\tENSCAFT00000003704.ENSCAFT00000003971.ENSCAFT00000004976.ENSCAFT00000006552.ENSCAFT00000007465.ENSCAFT00000008769.ENSCAFT00000011373.ENSCAFT00000015149.ENSCAFT00000015776.ENS\nCAFT00000019177.ENSCAFT00000019466.ENSCAFT00000019757.ENSCAFT00000020561.ENSCAFT00000021332.ENSCAFT00000027259.ENSCAFT00000027704.ENSCAFT00000029367.ENSCAFT00000037977\tpolar\n\npolar_ABC+GRZ\tCell cycle\t19\t132919410090.0\t0.759699050046\t90.5\t0.00379852992534\tENSCAFT00000001725.ENSCAFT00000001862.ENSCAFT00000003425.ENSCAFT00000003463.ENSCAFT00000004945.ENSCAFT00000005562.ENSCAFT00000010616.ENSCAFT00000010664.ENSCAFT00000011883.ENSCA\nFT00000014969.ENSCAFT00000016879.ENSCAFT00000018932.ENSCAFT00000021002.ENSCAFT00000023166.ENSCAFT00000025560.ENSCAFT00000026465.ENSCAFT00000030508.ENSCAFT00000030570.ENSCAFT00000030976\tpolar\n\npolar_ABC+GRZ\tHepatitis C\t16\t123721615870.0\t0.645352706277\t75.5\t0.022045853716\tENSCAFT00000000897.ENSCAFT00000006305.ENSCAFT00000010257.ENSCAFT00000014017.ENSCAFT00000014032.ENSCAFT00000014194.ENSCAFT00000014202.ENSCAFT00000015231.ENSCAFT00000017863.ENSCAF\nT00000024017.ENSCAFT00000026465.ENSCAFT00000027550.ENSCAFT00000027678.ENSCAFT00000029177.ENSCAFT00000031062.ENSCAFT00000039509\tpolar\n", "update_time": "2013-06-18 16:42:55.024389", "name": "(Method 3B) Pathways with average KaKs polar and ABC-GRZ (UMannW statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_Pathways_with_average_KaKs_polar_and_ABC-GRZ_(UMannW_statistically_significant).tabular", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-18 16:39:52.666294", "hid": 114, "parent_id": null, "annotation": "None", "blurb": "10 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 10, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "uploaded tabular file", "peek": "polar_ABC+GRZ\tDNA recombination\t4\t204610578211.0\t0.25\t2.0\t0.0397746675045\tENSCAFT00000001353.ENSCAFT00000007174.ENSCAFT00000009725.ENSCAFT00000010949\tpolar\n\npolar_ABC+GRZ\tGolgi membrane\t15\t61287795712.4\t0.422966268894\t72.0\t0.0431081880079\tENSCAFT00000005661.ENSCAFT00000007546.ENSCAFT00000008956.ENSCAFT00000009848.ENSCAFT00000011305.ENSCAFT00000011885.ENSCAFT00000014931.ENSCAFT00000015692.ENSCAFT00000017086.ENS\nCAFT00000020534.ENSCAFT00000021291.ENSCAFT00000028560.ENSCAFT00000028873.ENSCAFT00000031040.ENSCAFT00000031269\tpolar\n\npolar_ABC+GRZ\tRNA metabolic process\t4\t133262265738.0\t0.0843533018575\t0.0\t0.0102702403156\tENSCAFT00000003862.ENSCAFT00000014352.ENSCAFT00000024618.ENSCAFT00000030290\tpolar\n\npolar_ABC+GRZ\tT cell differentiation in thymus\t10\t81844231284.2\t0.743428195087\t23.5\t0.0208675336957\tENSCAFT00000005426.ENSCAFT00000005687.ENSCAFT00000008272.ENSCAFT00000009725.ENSCAFT00000010616.ENSCAFT00000010949.ENSCAFT00000023308.ENSCAFT00000026465.ENSC\nAFT00000030498.ENSCAFT00000030997\tpolar\n", "update_time": "2013-06-18 16:44:56.791409", "name": "(Method 3B) GO terms with average KaKs polar and ABC-GRZ (UMannW statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_GO_terms_with_average_KaKs_polar_and_ABC-GRZ_(UMannW_statistically_significant).tabular", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-18 16:44:40.190950", "hid": 115, "parent_id": null, "annotation": "None", "blurb": "114 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 114, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "Filtering with c9.find('polar')>-1, \r\nkept 50.00% of 10 valid lines (10 total lines).\r\n", "peek": "polar_ABC+GRZ\tBile secretion\t18\t265298562743.0\t0.435046133126\t89.0\t0.009706903976\tENSCAFT00000003704.ENSCAFT00000003971.ENSCAFT00000004976.ENSCAFT00000006552.ENSCAFT00000007465.ENSCAFT00000008769.ENSCAFT00000011373.ENSCAFT00000015149.ENSCAFT00000015776.ENS\nCAFT00000019177.ENSCAFT00000019466.ENSCAFT00000019757.ENSCAFT00000020561.ENSCAFT00000021332.ENSCAFT00000027259.ENSCAFT00000027704.ENSCAFT00000029367.ENSCAFT00000037977\tpolar\n\npolar_ABC+GRZ\tCell cycle\t19\t132919410090.0\t0.759699050046\t90.5\t0.00379852992534\tENSCAFT00000001725.ENSCAFT00000001862.ENSCAFT00000003425.ENSCAFT00000003463.ENSCAFT00000004945.ENSCAFT00000005562.ENSCAFT00000010616.ENSCAFT00000010664.ENSCAFT00000011883.ENSCA\nFT00000014969.ENSCAFT00000016879.ENSCAFT00000018932.ENSCAFT00000021002.ENSCAFT00000023166.ENSCAFT00000025560.ENSCAFT00000026465.ENSCAFT00000030508.ENSCAFT00000030570.ENSCAFT00000030976\tpolar\n\npolar_ABC+GRZ\tHepatitis C\t16\t123721615870.0\t0.645352706277\t75.5\t0.022045853716\tENSCAFT00000000897.ENSCAFT00000006305.ENSCAFT00000010257.ENSCAFT00000014017.ENSCAFT00000014032.ENSCAFT00000014194.ENSCAFT00000014202.ENSCAFT00000015231.ENSCAFT00000017863.ENSCAF\nT00000024017.ENSCAFT00000026465.ENSCAFT00000027550.ENSCAFT00000027678.ENSCAFT00000029177.ENSCAFT00000031062.ENSCAFT00000039509\tpolar\n", "update_time": "2013-06-18 17:03:12.145233", "name": "(Method 3B) Pathways with average KaKs polar > ABC-GRZ (UMannW statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_Pathways_with_average_KaKs_polar___ABC-GRZ_(UMannW_statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 17:02:38.618558", "hid": 123, "parent_id": null, "annotation": "None", "blurb": "5 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 5, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "Filtering with c9.find('ABC-GRZ')>-1, \r\nkept 50.00% of 10 valid lines (10 total lines).\r\n", "peek": "polar_ABC+GRZ\tArrhythmogenic right ventricular cardiomyopathy (ARVC)\t22\t0.252258414351\t192576679701.0\t99.5\t0.000331244771989\tENSCAFT00000000090.ENSCAFT00000004270.ENSCAFT00000006184.ENSCAFT00000009445.ENSCAFT00000011472.ENSCAFT00000012528.ENSCAFT0000001412\n6.ENSCAFT00000015962.ENSCAFT00000016656.ENSCAFT00000017321.ENSCAFT00000017810.ENSCAFT00000018075.ENSCAFT00000021853.ENSCAFT00000022461.ENSCAFT00000023277.ENSCAFT00000025343.ENSCAFT00000027712.ENSCAFT00000027856.ENSCAFT00000029260.ENSCAFT00000029284.ENSCAFT\n00000036842.ENSCAFT00000037064\tABC-GRZ\n\npolar_ABC+GRZ\tNotch signaling pathway\t10\t0.108455424096\t35327367587.5\t19.0\t0.00892494613439\tENSCAFT00000005426.ENSCAFT00000009074.ENSCAFT00000011198.ENSCAFT00000015366.ENSCAFT00000016879.ENSCAFT00000020970.ENSCAFT00000025527.ENSCAFT00000025565.ENSCAFT00000\n030570.ENSCAFT00000031242\tABC-GRZ\n\npolar_ABC+GRZ\tPhototransduction\t8\t0.375\t405607349145.0\t13.0\t0.020738222107\tENSCAFT00000002572.ENSCAFT00000007461.ENSCAFT00000008452.ENSCAFT00000012650.ENSCAFT00000026758.ENSCAFT00000027651.ENSCAFT00000035729.ENSCAFT00000036012\tABC-GRZ\n", "update_time": "2013-06-18 17:04:07.033560", "name": "(Method 3B) Pathways with average KaKs ABC-GRZ > polar (UMannW statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_Pathways_with_average_KaKs_ABC-GRZ___polar_(UMannW_statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 17:03:42.318228", "hid": 124, "parent_id": null, "annotation": "None", "blurb": "5 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 5, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "Filtering with c2.find('ATP')>-1 or c2.find('oxid')>-1 or c2.find('energ')>-1 or c2.find('mitoc')>-1 or c2.find('Oxid')>-1 or c2.find('Energ')>-1 or c2.find('Mitoc')>-1, \r\nkept 0.00% of 5 valid lines (5 total lines).\r\n", "peek": "no peek", "update_time": "2013-06-18 17:11:37.834823", "name": " (Method 3B) Pathways with average KaKs polar > ABC-GRZ (UMannW statistically significant) associated to cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/_(Method_3B)_Pathways_with_average_KaKs_polar___ABC-GRZ_(UMannW_statistically_significant)_associated_to_cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 17:08:51.058283", "hid": 125, "parent_id": null, "annotation": "None", "blurb": "empty", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 5, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "Filtering with c2.find('ATP')>-1 or c2.find('oxid')>-1 or c2.find('energ')>-1 or c2.find('mitoc')>-1 or c2.find('Oxid')>-1 or c2.find('Energ')>-1 or c2.find('Mitoc')>-1, \r\nkept 0.00% of 5 valid lines (5 total lines).\r\n", "peek": "no peek", "update_time": "2013-06-18 17:12:04.201464", "name": "(Method 3B) Pathways with average KaKs ABC-GRZ > polar (UMannW statistically significant) associated to cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_Pathways_with_average_KaKs_ABC-GRZ___polar_(UMannW_statistically_significant)_associated_to_cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 17:11:22.292639", "hid": 126, "parent_id": null, "annotation": "None", "blurb": "empty", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 5, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "Filtering with c9.find('polar')>-1, \r\nkept 38.60% of 114 valid lines (114 total lines).\r\n", "peek": "polar_ABC+GRZ\tDNA recombination\t4\t204610578211.0\t0.25\t2.0\t0.0397746675045\tENSCAFT00000001353.ENSCAFT00000007174.ENSCAFT00000009725.ENSCAFT00000010949\tpolar\n\npolar_ABC+GRZ\tGolgi membrane\t15\t61287795712.4\t0.422966268894\t72.0\t0.0431081880079\tENSCAFT00000005661.ENSCAFT00000007546.ENSCAFT00000008956.ENSCAFT00000009848.ENSCAFT00000011305.ENSCAFT00000011885.ENSCAFT00000014931.ENSCAFT00000015692.ENSCAFT00000017086.ENS\nCAFT00000020534.ENSCAFT00000021291.ENSCAFT00000028560.ENSCAFT00000028873.ENSCAFT00000031040.ENSCAFT00000031269\tpolar\n\npolar_ABC+GRZ\tRNA metabolic process\t4\t133262265738.0\t0.0843533018575\t0.0\t0.0102702403156\tENSCAFT00000003862.ENSCAFT00000014352.ENSCAFT00000024618.ENSCAFT00000030290\tpolar\n\npolar_ABC+GRZ\tT cell differentiation in thymus\t10\t81844231284.2\t0.743428195087\t23.5\t0.0208675336957\tENSCAFT00000005426.ENSCAFT00000005687.ENSCAFT00000008272.ENSCAFT00000009725.ENSCAFT00000010616.ENSCAFT00000010949.ENSCAFT00000023308.ENSCAFT00000026465.ENSC\nAFT00000030498.ENSCAFT00000030997\tpolar\n", "update_time": "2013-06-18 17:13:48.310778", "name": "(Method 3B) GO terms with average KaKs polar > ABC-GRZ (UMannW statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_GO_terms_with_average_KaKs_polar___ABC-GRZ_(UMannW_statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 17:12:58.714109", "hid": 127, "parent_id": null, "annotation": "None", "blurb": "44 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 44, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "Filtering with c9.find('ABC-GRZ')>-1, \r\nkept 61.40% of 114 valid lines (114 total lines).\r\n", "peek": "polar_ABC+GRZ\tC2H2 zinc finger domain binding\t4\t0.5\t517373470402.0\t2.0\t0.0369029492877\tENSCAFT00000004031.ENSCAFT00000006644.ENSCAFT00000011914.ENSCAFT00000017891\tABC-GRZ\n\npolar_ABC+GRZ\tRac guanyl-nucleotide exchange factor activity\t6\t0.166666666667\t43850994771.8\t7.0\t0.0364365771562\tENSCAFT00000006766.ENSCAFT00000011396.ENSCAFT00000012231.ENSCAFT00000019642.ENSCAFT00000026895.ENSCAFT00000029523\tABC-GRZ\n\npolar_ABC+GRZ\tacetyltransferase activity\t5\t8.11699688622e-13\t45742167009.2\t2.0\t0.0136613341731\tENSCAFT00000008642.ENSCAFT00000009358.ENSCAFT00000024383.ENSCAFT00000026659.ENSCAFT00000030570\tABC-GRZ\n\npolar_ABC+GRZ\talpha-actinin binding\t3\t0.139380507967\t515484061932.0\t0.0\t0.0247673068842\tENSCAFT00000014756.ENSCAFT00000015327.ENSCAFT00000017810\tABC-GRZ\n\npolar_ABC+GRZ\tanagen\t3\t4.58304956391e-13\t787712349210.0\t0.0\t0.0247673068842\tENSCAFT00000029177.ENSCAFT00000031242.ENSCAFT00000035558\tABC-GRZ\n\npolar_ABC+GRZ\tanatomical structure morphogenesis\t4\t0.25\t35233598864.5\t1.5\t0.0263849392379\tENSCAFT00000001265.ENSCAFT00000023312.ENSCAFT00000026658.ENSCAFT00000028054\tABC-GRZ\n", "update_time": "2013-06-18 17:17:16.495743", "name": "(Method 3B) GO terms with average KaKs ABC-GRZ > polar  (UMannW statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_GO_terms_with_average_KaKs_ABC-GRZ___polar__(UMannW_statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 17:16:50.853843", "hid": 128, "parent_id": null, "annotation": "None", "blurb": "70 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 70, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "Filtering with c2.find('ATP')>-1 or c2.find('oxid')>-1 or c2.find('energ')>-1 or c2.find('mitoc')>-1 or c2.find('Oxid')>-1 or c2.find('Energ')>-1 or c2.find('Mitoc')>-1, \r\nkept 6.82% of 44 valid lines (44 total lines).\r\n", "peek": "polar_ABC+GRZ\tnegative regulation of nitric-oxide synthase activity\t3\t222345762295.0\t2.15749173872e-13\t0.0\t0.0239505201214\tENSCAFT00000008956.ENSCAFT00000028062.ENSCAFT00000032002\tpolar\n\npolar_ABC+GRZ\toxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen\t11\t311206030516.0\t0.338863827109\t33.0\t0.0343527252862\tENSCAFT00000000446.ENSCAFT00000006437.ENSCAFT00000008128.ENSCAFT00000008161.ENSCAFT000\n00008166.ENSCAFT00000011373.ENSCAFT00000013529.ENSCAFT00000014574.ENSCAFT00000016342.ENSCAFT00000024355.ENSCAFT00000025968\tpolar\n\npolar_ABC+GRZ\toxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen\t4\t234155509671.0\t3.22666170029e-13\t0.0\t0.0097003021354\n8\tENSCAFT00000006437.ENSCAFT00000008128.ENSCAFT00000008161.ENSCAFT00000024355\tpolar\n\n", "update_time": "2013-06-18 17:19:43.360066", "name": "(Method 3B) GO terms with average KaKs polar > ABC-GRZ (UMannW statistically significant) associated to cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_GO_terms_with_average_KaKs_polar___ABC-GRZ_(UMannW_statistically_significant)_associated_to_cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 17:19:23.265222", "hid": 129, "parent_id": null, "annotation": "None", "blurb": "3 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 3, "column_types": ["str", "list", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "Filtering with c2.find('ATP')>-1 or c2.find('oxid')>-1 or c2.find('energ')>-1 or c2.find('mitoc')>-1 or c2.find('Oxid')>-1 or c2.find('Energ')>-1 or c2.find('Mitoc')>-1, \r\nkept 0.00% of 70 valid lines (70 total lines).\r\n", "peek": "no peek", "update_time": "2013-06-18 17:24:04.299024", "name": "(Method 3B) GO terms with average KaKs ABC-GRZ > polar (UMannW statistically significant) associated to cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_GO_terms_with_average_KaKs_ABC-GRZ___polar_(UMannW_statistically_significant)_associated_to_cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 17:23:47.164366", "hid": 130, "parent_id": null, "annotation": "None", "blurb": "empty", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 70, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}]