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"update_time": "2013-06-16 04:33:10.678711", "name": "c136 = Genotype black", "extension": "gd_snp", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/c136___Genotype_black.gd_snp", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-16 04:33:10.557562", "hid": 9, "parent_id": null, "annotation": null, "blurb": "7,659,722 lines", "metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "comment_metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "scaffold": 1, "pos": 2, "dbkey": "canFam2", "individuals": [["AK1", 9], ["AK2", 13], ["AK3", 17], ["AK4", 21], ["AK5", 25], ["PB1", 29], ["PB2", 33], ["PB3", 37], ["PB4", 41], ["PB5", 45], ["PB6", 49], ["PB7", 53], ["PB8", 57], ["PB9", 61], ["PB10", 65], ["PB11", 69], ["PB12", 73], ["PB13", 77], ["PB14", 81], ["PB15", 85], ["PB16", 89], ["PB17", 93], ["PB18", 97], ["ancient", 101], ["ABC1", 105], ["ABC2", 109], ["GRZ", 113], ["BLK", 117]], "ref": 6, "species": "bear"}, "comment_lines": null, "pos": 7, "dbkey": "canFam2", "individual_columns": [9, 13, 17, 21, 25, 29, 33, 37, 41, 45, 49, 53, 57, 61, 65, 69, 73, 77, 81, 85, 89, 93, 97, 101, 105, 109, 113, 117], "individual_names": ["AK1", "AK2", "AK3", "AK4", "AK5", "PB1", "PB2", "PB3", "PB4", "PB5", "PB6", "PB7", "PB8", "PB9", "PB10", "PB11", "PB12", "PB13", "PB14", "PB15", "PB16", "PB17", "PB18", "ancient", "ABC1", "ABC2", "GRZ", "BLK"], "columns": 137, "scaffold": 6, "column_types": ["str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int"], "ref": 6, "species": "bear", "data_lines": 7659722}}, {"info": "NoneFiltering with c136==0 or c136==2, \nkept 95.18% of 7659722 valid lines (7659722 total lines).\n", "peek": 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"update_time": "2013-06-16 04:33:10.794614", "name": "Black has an allele fixed", "extension": "gd_snp", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/Black_has_an_allele_fixed.gd_snp", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-16 04:33:10.680380", "hid": 10, "parent_id": null, "annotation": null, "blurb": "7,290,488 lines", "metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", 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"24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "scaffold": 1, "pos": 2, "dbkey": "canFam2", "individuals": [["AK1", 9], ["AK2", 13], ["AK3", 17], ["AK4", 21], ["AK5", 25], ["PB1", 29], ["PB2", 33], ["PB3", 37], ["PB4", 41], ["PB5", 45], ["PB6", 49], ["PB7", 53], ["PB8", 57], ["PB9", 61], ["PB10", 65], ["PB11", 69], ["PB12", 73], ["PB13", 77], ["PB14", 81], ["PB15", 85], ["PB16", 89], ["PB17", 93], ["PB18", 97], ["ancient", 101], ["ABC1", 105], ["ABC2", 109], ["GRZ", 113], ["BLK", 117]], "ref": 6, "species": "bear"}, "comment_lines": null, "pos": 7, "dbkey": "canFam2", "individual_columns": [9, 13, 17, 21, 25, 29, 33, 37, 41, 45, 49, 53, 57, 61, 65, 69, 73, 77, 81, 85, 89, 93, 97, 101, 105, 109, 113, 117], "individual_names": ["AK1", "AK2", "AK3", "AK4", "AK5", "PB1", "PB2", "PB3", "PB4", "PB5", "PB6", "PB7", "PB8", "PB9", "PB10", "PB11", "PB12", "PB13", "PB14", "PB15", "PB16", "PB17", "PB18", "ancient", "ABC1", "ABC2", "GRZ", "BLK"], "columns": 137, "scaffold": 6, "column_types": ["str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int"], "ref": 6, "species": "bear", "data_lines": 7290488}}, {"info": "NoneFiltering with c132!=1 and c132==c136 and c128!=c132, \r\nkept 27.07% of 7290488 valid lines (7290488 total lines).\r\n", "peek": 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"update_time": "2013-06-17 04:36:51.210222", "name": "(Method 1) SNPs derived in polar", "extension": "gd_snp", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_SNPs_derived_in_polar.gd_snp", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:01:57.968567", "hid": 11, "parent_id": null, "annotation": "None", "blurb": "1,973,677 lines", "metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "comment_metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "scaffold": 1, "pos": 2, "dbkey": "canFam2", "individuals": [["AK1", 9], ["AK2", 13], ["AK3", 17], ["AK4", 21], ["AK5", 25], ["PB1", 29], ["PB2", 33], ["PB3", 37], ["PB4", 41], ["PB5", 45], ["PB6", 49], ["PB7", 53], ["PB8", 57], ["PB9", 61], ["PB10", 65], ["PB11", 69], ["PB12", 73], ["PB13", 77], ["PB14", 81], ["PB15", 85], ["PB16", 89], ["PB17", 93], ["PB18", 97], ["ancient", 101], ["ABC1", 105], ["ABC2", 109], ["GRZ", 113], ["BLK", 117]], "ref": 6, "species": "bear"}, "comment_lines": null, "pos": 7, "dbkey": "canFam2", "individual_columns": [9, 13, 17, 21, 25, 29, 33, 37, 41, 45, 49, 53, 57, 61, 65, 69, 73, 77, 81, 85, 89, 93, 97, 101, 105, 109, 113, 117], "individual_names": ["AK1", "AK2", "AK3", "AK4", "AK5", "PB1", "PB2", "PB3", "PB4", "PB5", "PB6", "PB7", "PB8", "PB9", "PB10", "PB11", "PB12", "PB13", "PB14", "PB15", "PB16", "PB17", "PB18", "ancient", "ABC1", "ABC2", "GRZ", "BLK"], "columns": 137, "scaffold": 6, "column_types": ["str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int"], "ref": 6, "species": "bear", "data_lines": 1973677}}, {"info": "NoneFiltering with c128!=1 and c128==c136 and c132!=c136, \r\nkept 49.02% of 7290488 valid lines (7290488 total lines).\r\n", "peek": 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regulation of glucose import.negative regulation of \nglycogen biosynthetic process.negative regulation of insulin receptor signaling pathway.negative regulation of ossification.negative regulation of protein autophosphorylation.nucleoside triphosphate catabolic process.nucleoside-triphosphate diphosphatase a\nctivity.nucleotide diphosphatase activity.phosphate-containing compound metabolic process.plasma membrane.protein binding.protein homodimerization activity.sequestering of triglyceride\n", "update_time": "2013-06-17 04:41:26.980002", "name": "bear genes + GO", "extension": "interval", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/bear_genes___GO.interval", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-16 22:22:50.568828", "hid": 19, "parent_id": null, "annotation": "None", "blurb": "19,305 regions", "metadata": {"chromCol": 3, "column_names": null, "nameCol": 2, "comment_lines": null, "endCol": 6, "dbkey": "canFam2", "strandCol": 4, "startCol": 5, "columns": 21, "column_types": ["int", "str", "str", "str", "int", "int", "int", "int", "int", "list", "list", "int", "str", "str", "str", "list", "str", "str", "str", "str", "str"], "data_lines": 19305}}, {"info": "None", "peek": "5\t1\t1\t0.0020\tpolysaccharide binding\n\n5\t1\t1\t0.0020\tanion transmembrane transporter activity\n\n4\t1\t1\t0.0070\tresponse to temperature stimulus\n\n4\t1\t1\t0.0070\tprotein targeting to lysosome\n\n4\t1\t1\t0.0070\tmuscle alpha-actinin binding\n\n4\t1\t1\t0.0070\tequilibrioception\n", "update_time": "2013-06-17 04:33:51.452993", "name": "(Method 1) Rank GO terms on non-synonymous SNPs derived in polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Rank_GO_terms_on_non-synonymous_SNPs_derived_in_polar.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-16 22:28:51.706803", "hid": 22, "parent_id": null, "annotation": "None", "blurb": "10,458 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 10458, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 2.46% of 10458 valid lines (10458 total lines).\r\n", "peek": "5\t1\t1\t0.0020\tpolysaccharide binding\n\n5\t1\t1\t0.0020\tanion transmembrane transporter activity\n\n4\t1\t1\t0.0070\tresponse to temperature stimulus\n\n4\t1\t1\t0.0070\tprotein targeting to lysosome\n\n4\t1\t1\t0.0070\tmuscle alpha-actinin binding\n\n4\t1\t1\t0.0070\tequilibrioception\n", "update_time": "2013-06-17 04:33:31.343968", "name": "(Method 1) Rank GO terms on non-synonymous SNPs derived in polar (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Rank_GO_terms_on_non-synonymous_SNPs_derived_in_polar_(statistically_significant).tabular", "deleted": false, "designation": 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pathways\n\nchr1\t3266093\tENSCAFT00000000001\tENSCAFP00000000001\tN\t582\tD\t92.6\t144\t100856150\t3266093chr1\tContig46_chr1_3265165_3266703\t946\tT\tC\t143.0\tchr1\t3266093\tT\t2\t0\t2\t33\t4\t0\t2\t39\t5\t0\t2\t42\t3\t0\t2\t36\t3\t0\t2\t36\t7\t0\t2\t48\t14\t0\t2\t69\t13\t0\t2\t66\t4\t0\t2\t39\t5\t0\t2\t42\t10\t0\t2\t57\t3\t0\t2\n\t36\t6\t0\t2\t45\t6\t0\t2\t45\t6\t0\t2\t45\t5\t0\t2\t42\t3\t0\t2\t36\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t0\t-1\t0\t3\t0\t2\t36\t0\t20\t0\t57\t29\t0\t2\t114\t22\t0\t2\t93\t18\t0\t2\t81\tY\t44\t0.373\t0\t0.1639\t104\t0\t2\t69\t51\t20\t1\t114\t18\t0\t2\t81\t3266093chr1\t476153\tcfa00230=Purine metabolism.cfa0\n0500=Starch and sucrose metabolism.cfa00740=Riboflavin metabolism.cfa00760=Nicotinate and nicotinamide metabolism.cfa00770=Pantothenate and CoA biosynthesis.cfa01100=Metabolic pathways\n", "update_time": "2013-06-17 04:32:22.063298", "name": "(Method 1) Get Pathways on bear non-synonymous SNPs formatted ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Get_Pathways_on_bear_non-synonymous_SNPs_formatted_ABC-GRZ.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-16 22:37:56.829599", "hid": 27, "parent_id": null, "annotation": "None", "blurb": "7,162 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 7162, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", 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non-synonymous SNPs formatted polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Rank_Pathways_on_bear_non-synonymous_SNPs_formatted_polar.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-16 22:40:26.369907", "hid": 29, "parent_id": null, "annotation": "None", "blurb": "241 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 241, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "1\t1\t1\t0.18\tcfa00472=D-Arginine and D-ornithine metabolism\n\n7\t0.58\t2\t0.0018\tcfa03450=Non-homologous end-joining\n\n4\t0.57\t3\t0.022\tcfa00460=Cyanoamino acid metabolism\n\n8\t0.5\t4\t0.0031\tcfa00450=Selenocompound metabolism\n\n2\t0.5\t4\t0.15\tcfa00750=Vitamin B6 metabolism\n\n1\t0.5\t4\t0.32\tcfa00780=Biotin metabolism\n", "update_time": "2013-06-17 04:31:45.907472", "name": "(Method 1) Rank Pathways on bear non-synonymous SNPs formatted ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Rank_Pathways_on_bear_non-synonymous_SNPs_formatted_ABC-GRZ.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-16 22:40:39.280009", "hid": 30, "parent_id": null, "annotation": "None", "blurb": "241 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 241, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 23.65% of 241 valid lines (241 total lines).\r\n", "peek": "2\t1\t1\t0.037\tcfa00780=Biotin metabolism\n\n4\t0.57\t2\t0.029\tcfa00460=Cyanoamino acid metabolism\n\n5\t0.56\t3\t0.016\tcfa00062=Fatty acid elongation\n\n8\t0.5\t4\t0.0054\tcfa00450=Selenocompound metabolism\n\n39\t0.49\t6\t1.7E-9\tcfa04512=ECM-receptor interaction\n\n20\t0.49\t6\t0.000019\tcfa02010=ABC transporters\n", "update_time": "2013-06-17 04:31:32.008486", "name": "(Method 1) Rank Pathways on bear non-synonymous SNPs formatted polar (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Rank_Pathways_on_bear_non-synonymous_SNPs_formatted_polar_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:41:59.133845", "hid": 31, "parent_id": null, "annotation": "None", "blurb": "57 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 57, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "None", "peek": "7\t0.58\t2\t0.0018\tcfa03450=Non-homologous end-joining\n\n4\t0.57\t3\t0.022\tcfa00460=Cyanoamino acid metabolism\n\n8\t0.5\t4\t0.0031\tcfa00450=Selenocompound metabolism\n\n22\t0.49\t7\t0.0000017\tcfa03460=Fanconi anemia pathway\n\n9\t0.47\t8\t0.0028\tcfa00531=Glycosaminoglycan degradation\n\n8\t0.47\t8\t0.0050\tcfa00511=Other glycan degradation\n", "update_time": "2013-06-17 04:31:18.067683", "name": "(Method 1) Rank Pathways on bear non-synonymous SNPs formatted ABC-GRZ (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Rank_Pathways_on_bear_non-synonymous_SNPs_formatted_ABC-GRZ_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:42:32.789240", "hid": 32, "parent_id": null, "annotation": "None", "blurb": "54 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 54, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1, \r\nkept 2.72% of 257 valid lines (257 total lines).\r\n", "peek": "3\t1\t1\t0.024\ttranscription from mitochondrial promoter\n\n10\t0.62\t14\t0.0096\tATPase activity, coupled to transmembrane movement of substances\n\n14\t0.58\t18\t0.0028\tmitochondrial nucleoid\n\n32\t0.48\t27\t0.00093\tATP catabolic process\n\n32\t0.47\t28\t0.0018\tATPase activity\n\n15\t0.47\t28\t0.032\tATP-dependent helicase activity\n", "update_time": "2013-06-17 04:29:32.488436", "name": "(Method 1) GO terms on non-synonymous SNPs derived in polar (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_GO_terms_on_non-synonymous_SNPs_derived_in_polar_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:46:51.545506", "hid": 34, "parent_id": null, "annotation": "None", "blurb": "7 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 7, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1, \r\nkept 2.21% of 271 valid lines (271 total lines).\r\n", "peek": "3\t1\t1\t0.017\ttranscription from mitochondrial promoter\n\n4\t0.67\t11\t0.043\tphospholipid-translocating ATPase activity\n\n12\t0.5\t25\t0.017\tmitochondrial nucleoid\n\n27\t0.41\t34\t0.010\tATP catabolic process\n\n26\t0.38\t37\t0.026\tATPase activity\n\n180\t0.31\t44\t0.0054\tATP binding\n", "update_time": "2013-06-17 04:29:18.638108", "name": "(Method 1) GO terms on non-synonymous SNPs derived in ABC-GRZ (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_GO_terms_on_non-synonymous_SNPs_derived_in_ABC-GRZ_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:50:12.895795", "hid": 36, "parent_id": null, "annotation": "None", "blurb": "6 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 6, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1, \r\nkept 1.75% of 57 valid lines (57 total lines).\r\n", "peek": "14\t0.095\t218\t0.0027\tcfa00190=Oxidative phosphorylation\n\n\n\n\n\n", "update_time": "2013-06-17 04:29:03.890309", "name": "(Method 1) Pathways on non-synonymous SNPs derived in polar (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Pathways_on_non-synonymous_SNPs_derived_in_polar_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:52:13.928384", "hid": 37, "parent_id": null, "annotation": "None", "blurb": "1 line", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 1, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1, \r\nkept 1.85% of 54 valid lines (54 total lines).\r\n", "peek": "11\t0.074\t226\t0.00036\tcfa00190=Oxidative phosphorylation\n\n\n\n\n\n", "update_time": "2013-06-17 04:28:44.919196", "name": "(Method 1) Pathways on non-synonymous SNPs derived in ABC-GRZ (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_1)_Pathways_on_non-synonymous_SNPs_derived_in_ABC-GRZ_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-16 22:52:59.241899", "hid": 38, "parent_id": null, "annotation": "None", "blurb": "1 line", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 1, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "NoneFiltering with (c128==2 and c132==0) or (c128==0 and c132==2), \r\nkept 12.93% of 7290488 valid lines (7290488 total lines).\r\n", "peek": "Contig137_chr1_3318581_3318883\t163\tT\tC\t999.0\tchr1\t3318736\tT\t5\t0\t2\t42\t6\t0\t2\t45\t2\t0\t2\t33\t2\t0\t2\t33\t3\t0\t2\t36\t18\t0\t2\t81\t19\t0\t2\t84\t20\t0\t2\t87\t19\t0\t2\t84\t1\t0\t2\t30\t16\t0\t2\t75\t8\t0\t2\t51\t17\t0\t2\t78\t7\t0\t2\t48\t12\t0\t2\t63\t4\t0\t2\t39\t2\t0\t2\t33\t1\t0\t2\t30\t5\t0\t2\t42\t0\t0\t-1\t0\t2\t0\t2\t33\t1\t0\t2\t30\t3\t0\t2\t36\t0\t0\t-1\t0\t0\t31\t0\t90\t0\t40\t0\t117\t0\t42\t0\t123\t41\t0\t2\t150\tY\t78\t0.175\t2\t1.0000\t173\t0\t2\t87\t0\t113\t0\t123\t41\t0\t2\t150\n\nContig167_chr1_3341093_3341273\t155\tA\tG\t999.0\tchr1\t3341248\tG\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t1\t2\t10\t1\t1\t2\t10\t4\t0\t2\t39\t4\t0\t2\t39\t1\t0\t2\t30\t3\t0\t2\t36\t1\t0\t2\t30\t3\t0\t2\t36\t1\t0\t2\t30\t3\t0\t2\t36\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t30\t1\t0\t2\t30\t1\t0\t2\t30\t0\t0\t-1\t0\t2\t0\t2\t33\t0\t0\t-1\t0\t0\t6\t0\t18\t0\t11\t0\t33\t0\t3\t0\t6\t8\t0\t2\t51\tN\t596\t+99.\t1\t0.8750\t28\t2\t2\t39\t0\t20\t0\t33\t8\t0\t2\t51\n\nContig36_chr1_3378709_3378915\t79\tA\tG\t999.0\tchr1\t3378792\tA\t2\t0\t2\t33\t0\t0\t-1\t0\t2\t0\t2\t33\t4\t0\t2\t39\t2\t0\t2\t33\t19\t0\t2\t84\t7\t0\t2\t48\t21\t0\t2\t90\t13\t0\t2\t66\t1\t0\t2\t30\t10\t0\t2\t57\t6\t0\t2\t45\t11\t0\t2\t60\t8\t0\t2\t51\t8\t0\t2\t51\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t3\t0\t2\t36\t1\t0\t2\t30\t1\t0\t2\t30\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t20\t0\t57\t0\t17\t0\t48\t0\t25\t0\t53\t0\t27\t0\t81\tN\t45\t1.560\t3\t1.0000\t124\t0\t2\t90\t0\t62\t0\t57\t0\t27\t0\t81\n\nContig36_chr1_3378709_3378915\t139\tG\tT\t999.0\tchr1\t3378852\tT\t3\t0\t2\t36\t0\t0\t-1\t0\t0\t0\t-1\t0\t2\t0\t2\t33\t2\t0\t2\t33\t10\t0\t2\t57\t3\t0\t2\t36\t9\t0\t2\t54\t8\t0\t2\t51\t2\t0\t2\t33\t10\t0\t2\t57\t4\t0\t2\t39\t6\t0\t2\t45\t4\t0\t2\t39\t7\t0\t2\t48\t1\t0\t2\t30\t0\t0\t-1\t0\t1\t0\t2\t30\t3\t0\t2\t36\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t13\t0\t36\t0\t9\t0\t24\t0\t8\t0\t21\t16\t0\t2\t75\tN\t60\t2.472\t0\t1.0000\t75\t0\t2\t57\t0\t30\t0\t36\t16\t0\t2\t75\n\nContig49_chr1_3400642_3400841\t173\tG\tA\t198.0\tchr1\t3400808\t-\t3\t0\t2\t36\t2\t0\t2\t33\t1\t0\t2\t30\t2\t0\t2\t33\t0\t0\t-1\t0\t3\t0\t2\t36\t8\t0\t2\t51\t5\t0\t2\t42\t6\t0\t2\t45\t3\t0\t2\t36\t6\t0\t2\t45\t1\t0\t2\t30\t5\t0\t2\t42\t2\t0\t2\t33\t7\t0\t2\t48\t4\t0\t2\t39\t2\t0\t2\t33\t1\t0\t2\t30\t1\t0\t2\t30\t2\t0\t2\t33\t1\t0\t2\t30\t2\t0\t2\t33\t2\t0\t2\t33\t0\t0\t-1\t0\t0\t7\t0\t18\t0\t8\t0\t21\t0\t7\t0\t18\t18\t0\t2\t81\tN\t15\t0.044\t1\t1.0000\t69\t0\t2\t51\t0\t22\t0\t21\t18\t0\t2\t81\n\nContig105_chr1_3499346_3499513\t131\tC\tG\t60.7\tchr1\t-1\tN\t1\t0\t2\t30\t2\t0\t2\t33\t0\t0\t-1\t0\t2\t0\t2\t33\t1\t0\t2\t30\t3\t0\t2\t36\t1\t0\t2\t30\t3\t0\t2\t36\t1\t0\t2\t30\t0\t0\t-1\t0\t4\t0\t2\t39\t1\t0\t2\t30\t5\t0\t2\t42\t4\t0\t2\t39\t3\t0\t2\t36\t2\t0\t2\t33\t0\t0\t-1\t0\t2\t0\t2\t33\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t0\t-1\t0\t2\t0\t2\t33\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t6\t0\t15\t0\t0\t-1\t0\t0\t2\t0\t3\t4\t0\t2\t39\tN\t-1\t1.657\t1\t1.0000\t38\t0\t2\t42\t0\t8\t0\t15\t4\t0\t2\t39\n", "update_time": "2013-06-17 04:38:44.061299", "name": "(Method 2) Polar and ABC-GRZ have a different fixed allele", "extension": "gd_snp", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Polar_and_ABC-GRZ_have_a_different_fixed_allele.gd_snp", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-17 04:25:59.436649", "hid": 42, "parent_id": null, "annotation": "None", "blurb": "942,375 lines", "metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "comment_metadata": {"rPos": 7, "column_names": ["scaf", "pos", "A", "B", "qual", "ref", "rpos", "rnuc", "1A", "1B", "1G", "1Q", "2A", "2B", "2G", "2Q", "3A", "3B", "3G", "3Q", "4A", "4B", "4G", "4Q", "5A", "5B", "5G", "5Q", "6A", "6B", "6G", "6Q", "7A", "7B", "7G", "7Q", "8A", "8B", "8G", "8Q", "9A", "9B", "9G", "9Q", "10A", "10B", "10G", "10Q", "11A", "11B", "11G", "11Q", "12A", "12B", "12G", "12Q", "13A", "13B", "13G", "13Q", "14A", "14B", "14G", "14Q", "15A", "15B", "15G", "15Q", "16A", "16B", "16G", "16Q", "17A", "17B", "17G", "17Q", "18A", "18B", "18G", "18Q", "19A", "19B", "19G", "19Q", "20A", "20B", "20G", "20Q", "21A", "21B", "21G", "21Q", "22A", "22B", "22G", "22Q", "23A", "23B", "23G", "23Q", "24A", "24B", "24G", "24Q", "25A", "25B", "25G", "25Q", "26A", "26B", "26G", "26Q", "27A", "27B", "27G", "27Q", "28A", "28B", "28G", "28Q", "pair", "dist", "prim", "rflp"], "scaffold": 1, "pos": 2, "dbkey": "canFam2", "individuals": [["AK1", 9], ["AK2", 13], ["AK3", 17], ["AK4", 21], ["AK5", 25], ["PB1", 29], ["PB2", 33], ["PB3", 37], ["PB4", 41], ["PB5", 45], ["PB6", 49], ["PB7", 53], ["PB8", 57], ["PB9", 61], ["PB10", 65], ["PB11", 69], ["PB12", 73], ["PB13", 77], ["PB14", 81], ["PB15", 85], ["PB16", 89], ["PB17", 93], ["PB18", 97], ["ancient", 101], ["ABC1", 105], ["ABC2", 109], ["GRZ", 113], ["BLK", 117]], "ref": 6, "species": "bear"}, "comment_lines": null, "pos": 7, "dbkey": "canFam2", "individual_columns": [9, 13, 17, 21, 25, 29, 33, 37, 41, 45, 49, 53, 57, 61, 65, 69, 73, 77, 81, 85, 89, 93, 97, 101, 105, 109, 113, 117], "individual_names": ["AK1", "AK2", "AK3", "AK4", "AK5", "PB1", "PB2", "PB3", "PB4", "PB5", "PB6", "PB7", "PB8", "PB9", "PB10", "PB11", "PB12", "PB13", "PB14", "PB15", "PB16", "PB17", "PB18", "ancient", "ABC1", "ABC2", "GRZ", "BLK"], "columns": 137, "scaffold": 6, "column_types": ["str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int"], "ref": 6, "species": "bear", "data_lines": 942375}}, {"info": "None", "peek": "Contig137_chr1_3318581_3318883\t163\tT\tC\t999.0\tchr1\t3318736\tT\t5\t0\t2\t42\t6\t0\t2\t45\t2\t0\t2\t33\t2\t0\t2\t33\t3\t0\t2\t36\t18\t0\t2\t81\t19\t0\t2\t84\t20\t0\t2\t87\t19\t0\t2\t84\t1\t0\t2\t30\t16\t0\t2\t75\t8\t0\t2\t51\t17\t0\t2\t78\t7\t0\t2\t48\t12\t0\t2\t63\t4\t0\t2\t39\t2\t0\t2\t33\t1\t0\t2\t30\t5\t0\t2\t42\t0\t0\t-1\t0\t2\t0\t2\t33\t\n1\t0\t2\t30\t3\t0\t2\t36\t0\t0\t-1\t0\t0\t31\t0\t90\t0\t40\t0\t117\t0\t42\t0\t123\t41\t0\t2\t150\tY\t78\t0.175\t2\t1.0000\t173\t0\t2\t87\t0\t113\t0\t123\t41\t0\t2\t150\t3318736chr1\n\nContig167_chr1_3341093_3341273\t155\tA\tG\t999.0\tchr1\t3341248\tG\t0\t0\t-1\t0\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t1\t2\t10\t1\t1\t2\t10\t4\t0\t2\t39\t4\t0\t2\t39\t1\t0\t2\t30\t3\t0\t2\t36\t1\t0\t2\t30\t3\t0\t2\t36\t1\t0\t2\t30\t3\t0\t2\t36\t0\t0\t-1\t0\t0\t0\t-1\t0\t0\t0\t-1\t0\t1\t0\t2\t30\t1\t0\t2\t30\t1\t0\t2\t30\t0\t0\t-1\t\n0\t2\t0\t2\t33\t0\t0\t-1\t0\t0\t6\t0\t18\t0\t11\t0\t33\t0\t3\t0\t6\t8\t0\t2\t51\tN\t596\t+99.\t1\t0.8750\t28\t2\t2\t39\t0\t20\t0\t33\t8\t0\t2\t51\t3341248chr1\n\nContig36_chr1_3378709_3378915\t79\tA\tG\t999.0\tchr1\t3378792\tA\t2\t0\t2\t33\t0\t0\t-1\t0\t2\t0\t2\t33\t4\t0\t2\t39\t2\t0\t2\t33\t19\t0\t2\t84\t7\t0\t2\t48\t21\t0\t2\t90\t13\t0\t2\t66\t1\t0\t2\t30\t10\t0\t2\t57\t6\t0\t2\t45\t11\t0\t2\t60\t8\t0\t2\t51\t8\t0\t2\t51\t1\t0\t2\t30\t0\t0\t-1\t0\t3\t0\t2\t36\t3\t0\t2\t36\t1\t0\t2\t30\t1\t0\t2\t30\t0\t0\t\n-1\t0\t1\t0\t2\t30\t0\t0\t-1\t0\t0\t20\t0\t57\t0\t17\t0\t48\t0\t25\t0\t53\t0\t27\t0\t81\tN\t45\t1.560\t3\t1.0000\t124\t0\t2\t90\t0\t62\t0\t57\t0\t27\t0\t81\t3378792chr1\n", "update_time": "2013-06-17 04:39:15.787813", "name": "(Method 2) Polar and ABC-GRZ have a different fixed allele formatted", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Polar_and_ABC-GRZ_have_a_different_fixed_allele_formatted.tabular", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-17 04:25:59.581400", "hid": 43, "parent_id": null, "annotation": "None", "blurb": "~960,000 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": null, "column_types": ["str", "int", "str", "str", "float", "str", "int", "str", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str", "int", "float", "int", "float", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "int", "str"], "columns": 138}}, {"info": "None", "peek": "chr28\t10009188\tENSCAFT00000012011\tENSCAFP00000011137\tE\t427\tD\t100.0\t87\t477769\t10009188chr28\n\nchr28\t10010785\tENSCAFT00000012011\tENSCAFP00000011137\tQ\t477\tQ\t95.2\t181\t477769\t10010785chr28\n\nchr28\t10011559\tENSCAFT00000012011\tENSCAFP00000011137\tA\t525\tA\t95.7\t198\t477769\t10011559chr28\n\nchr27\t10012030\tENSCAFT00000014611\tENSCAFP00000013515\tG\t212\tG\t93.0\t152\t486591\t10012030chr27\n\nchr27\t10018996\tENSCAFT00000014611\tENSCAFP00000013515\tC\t556\tC\t85.7\t77\t486591\t10018996chr27\n\nchr27\t10022079\tENSCAFT00000014611\tENSCAFP00000013515\tL\t695\tL\t100.0\t175\t486591\t10022079chr27\n", "update_time": "2013-06-17 04:43:41.480445", "name": "(Method 2) Genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 04:42:31.483902", "hid": 57, "parent_id": null, "annotation": "None", "blurb": "7,635 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 7635, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str"], "columns": 11}}, {"info": "Filtering with c5!=c7, \r\nkept 29.13% of 7635 valid lines (7635 total lines).\r\n", "peek": "chr28\t10009188\tENSCAFT00000012011\tENSCAFP00000011137\tE\t427\tD\t100.0\t87\t477769\t10009188chr28\n\nchr1\t101020385\tENSCAFT00000003500\tENSCAFP00000003246\tC\t523\tR\t86.7\t1079\t476357\t101020385chr1\n\nchr1\t101024430\tENSCAFT00000003500\tENSCAFP00000003246\tI\t152\tV\t97.6\t113\t476357\t101024430chr1\n\nchrX\t10138759\tENSCAFT00000018685\tENSCAFP00000017310\tC\t760\tR\t89.5\t50\t480841\t10138759chrX\n\nchr1\t101561323\tENSCAFT00000003560\tENSCAFP00000003298\tA\t715\tV\t96.6\t80\tU\t101561323chr1\n\nchr1\t101566210\tENSCAFT00000003560\tENSCAFP00000003298\tF\t588\tL\t92.6\t255\tU\t101566210chr1\n", "update_time": "2013-06-17 05:05:08.227723", "name": "(Method 2) non-synonymous SNPs in genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_non-synonymous_SNPs_in_genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 04:44:13.255754", "hid": 58, "parent_id": null, "annotation": "None", "blurb": "2,224 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 2224, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str"], "columns": 11}}, {"info": "", "peek": "4\t1\t1\t0.000099\tmuscle alpha-actinin binding\n\n2\t1\t1\t0.010\tspectrin\n\n2\t1\t1\t0.010\tsodium-dependent phosphate transport\n\n2\t1\t1\t0.010\tsecretion\n\n2\t1\t1\t0.010\tryanodine-sensitive calcium-release channel activity\n\n2\t1\t1\t0.010\tpulmonary artery morphogenesis\n", "update_time": "2013-06-17 05:05:20.849958", "name": "(Method 2) Rank GO terms on non-synonymous SNPs in genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_GO_terms_on_non-synonymous_SNPs_in_genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 04:53:17.057952", "hid": 59, "parent_id": null, "annotation": "None", "blurb": "10,458 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 10458, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "chr28\t10009188\tENSCAFT00000012011\tENSCAFP00000011137\tE\t427\tD\t100.0\t87\t477769\t10009188chr28\t477769\tN\n\nchr1\t101020385\tENSCAFT00000003500\tENSCAFP00000003246\tC\t523\tR\t86.7\t1079\t476357\t101020385chr1\t476357\tN\n\nchr1\t101024430\tENSCAFT00000003500\tENSCAFP00000003246\tI\t152\tV\t97.6\t113\t476357\t101024430chr1\t476357\tN\n\nchrX\t10138759\tENSCAFT00000018685\tENSCAFP00000017310\tC\t760\tR\t89.5\t50\t480841\t10138759chrX\t480841\tN\n\nchr1\t101561323\tENSCAFT00000003560\tENSCAFP00000003298\tA\t715\tV\t96.6\t80\tU\t101561323chr1\tU\tN\n\nchr1\t101566210\tENSCAFT00000003560\tENSCAFP00000003298\tF\t588\tL\t92.6\t255\tU\t101566210chr1\tU\tN\n", "update_time": "2013-06-17 05:08:52.157040", "name": "(Method 2) Get Pathways on non-synonymous SNPs in genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Get_Pathways_on_non-synonymous_SNPs_in_genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 05:08:01.659697", "hid": 61, "parent_id": null, "annotation": "None", "blurb": "2,224 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 2224, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "str"], "columns": 13}}, {"info": "", "peek": "1\t0.33\t1\t0.18\tcfa00300=Lysine biosynthesis\n\n12\t0.29\t2\t0.0000052\tcfa02010=ABC transporters\n\n5\t0.26\t3\t0.0053\tcfa01040=Biosynthesis of unsaturated fatty acids\n\n3\t0.25\t4\t0.035\tcfa03450=Non-homologous end-joining\n\n2\t0.25\t4\t0.085\tcfa00072=Synthesis and degradation of ketone bodies\n\n1\t0.25\t4\t0.23\tcfa00061=Fatty acid biosynthesis\n", "update_time": "2013-06-17 05:12:20.498407", "name": "(Method 2) Rank Pathways on non-synonymous SNPs in genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Pathways_on_non-synonymous_SNPs_in_genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 05:11:12.658022", "hid": 62, "parent_id": null, "annotation": "None", "blurb": "241 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 241, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 1.60% of 10458 valid lines (10458 total lines).\r\n", "peek": "4\t1\t1\t0.000099\tmuscle alpha-actinin binding\n\n2\t1\t1\t0.010\tspectrin\n\n2\t1\t1\t0.010\tsodium-dependent phosphate transport\n\n2\t1\t1\t0.010\tsecretion\n\n2\t1\t1\t0.010\tryanodine-sensitive calcium-release channel activity\n\n2\t1\t1\t0.010\tpulmonary artery morphogenesis\n", "update_time": "2013-06-17 05:15:10.767020", "name": "(Method 2) Rank GO terms on non-synonymous SNPs in genes with fixed different alleles in Polar and ABC-GRZ bears (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_GO_terms_on_non-synonymous_SNPs_in_genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:14:49.593037", "hid": 63, "parent_id": null, "annotation": "None", "blurb": "167 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 167, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 12.03% of 241 valid lines (241 total lines).\r\n", "peek": "12\t0.29\t2\t0.0000052\tcfa02010=ABC transporters\n\n5\t0.26\t3\t0.0053\tcfa01040=Biosynthesis of unsaturated fatty acids\n\n3\t0.25\t4\t0.035\tcfa03450=Non-homologous end-joining\n\n4\t0.24\t7\t0.019\tcfa04614=Renin-angiotensin system\n\n17\t0.22\t8\t0.0000067\tcfa04512=ECM-receptor interaction\n\n10\t0.18\t10\t0.0020\tcfa00562=Inositol phosphate metabolism\n", "update_time": "2013-06-17 05:15:57.750156", "name": "(Method 2) Rank Pathways on non-synonymous SNPs in genes with fixed different alleles in Polar and ABC-GRZ bears (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Pathways_on_non-synonymous_SNPs_in_genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:15:35.540072", "hid": 64, "parent_id": null, "annotation": "None", "blurb": "29 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 29, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "uploaded interval file", "peek": "chr28\t10009188\tENSCAFT00000012011\tENSCAFP00000011137\tE\t427\tD\t100.0\t87\t477769\t10009188chr28\t477769\tN\tbening\n\nchr28\t10010785\tENSCAFT00000012011\tENSCAFP00000011137\tQ\t477\tQ\t95.2\t181\t477769\t10010785chr28\t477769\tN\tbening\n\nchr28\t10011559\tENSCAFT00000012011\tENSCAFP00000011137\tA\t525\tA\t95.7\t198\t477769\t10011559chr28\t477769\tN\tbening\n\nchr27\t10012030\tENSCAFT00000014611\tENSCAFP00000013515\tG\t212\tG\t93.0\t152\t486591\t10012030chr27\t486591\tcfa04670=Leukocyte transendothelial migration.cfa04720=Long-term potentiation\tbening\n\nchr27\t10018996\tENSCAFT00000014611\tENSCAFP00000013515\tC\t556\tC\t85.7\t77\t486591\t10018996chr27\t486591\tcfa04670=Leukocyte transendothelial migration.cfa04720=Long-term potentiation\tbening\n\nchr27\t10022079\tENSCAFT00000014611\tENSCAFP00000013515\tL\t695\tL\t100.0\t175\t486591\t10022079chr27\t486591\tcfa04670=Leukocyte transendothelial migration.cfa04720=Long-term potentiation\tbening\n", "update_time": "2013-06-17 05:20:28.923533", "name": "(Method 2) Polyphen prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Polyphen_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-17 05:20:28.807175", "hid": 65, "parent_id": null, "annotation": null, "blurb": "7,635 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 7635, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "str", "str"], "columns": 14}}, {"info": "Filtering with c14.find('damaging')>-1, \r\nkept 7.58% of 7635 valid lines (7635 total lines).\r\n", "peek": "chr1\t101020385\tENSCAFT00000003500\tENSCAFP00000003246\tC\t523\tR\t86.7\t1079\t476357\t101020385chr1\t476357\tN\tdamaging\n\nchr1\t102877196\tENSCAFT00000003748\tENSCAFP00000003466\tT\t210\tA\t90.3\t83\tU\t102877196chr1\tU\tN\tdamaging\n\nchr30\t10462254\tENSCAFT00000014399\tENSCAFP00000013316\tQ\t1156\tE\t88.1\t184\t100856190\t10462254chr30\t487491\tcfa00562=Inositol phosphate metabolism.cfa01100=Metabolic pathways.cfa04020=Calcium signaling pathway.cfa04062=Chemokine signaling pathway.cfa04070=Phosph\natidylinositol signaling system.cfa04270=Vascular smooth muscle contraction.cfa04310=Wnt signaling pathway.cfa04540=Gap junction.cfa04720=Long-term potentiation.cfa04724=Glutamatergic synapse.cfa04725=Cholinergic synapse.cfa04728=Dopaminergic synapse.cfa04\n730=Long-term depression.cfa04912=GnRH signaling pathway.cfa04916=Melanogenesis.cfa04961=Endocrine and other factor-regulated calcium reabsorption.cfa04970=Salivary secretion.cfa04971=Gastric acid secretion.cfa04972=Pancreatic secretion.cfa05010=Alzheimer'\ns disease.cfa05016=Huntington's disease.cfa05142=Chagas disease (American trypanosomiasis).cfa05143=African trypanosomiasis.cfa05146=Amoebiasis\tdamaging\n", "update_time": "2013-06-17 05:21:54.324021", "name": "(Method 2) Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:21:25.082350", "hid": 66, "parent_id": null, "annotation": "None", "blurb": "579 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 579, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "str", "str"], "columns": 14}}, {"info": "", "peek": "2\t1\t1\t0.00083\tendoplasmic reticulum tubular network organization\n\n2\t1\t1\t0.00083\tATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity\n\n1\t1\t1\t0.029\tzymogen granule membrane\n\n1\t1\t1\t0.029\tvitelline membrane formation\n\n1\t1\t1\t0.029\tvitamin metabolic process\n\n1\t1\t1\t0.029\tvitamin E biosynthetic process\n", "update_time": "2013-06-17 05:24:04.750668", "name": "(Method 2) Rank GO terms Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_GO_terms_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 05:22:50.958855", "hid": 67, "parent_id": null, "annotation": "None", "blurb": "10,458 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 10458, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 1.59% of 10458 valid lines (10458 total lines).\r\n", "peek": "2\t1\t1\t0.00083\tendoplasmic reticulum tubular network organization\n\n2\t1\t1\t0.00083\tATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity\n\n1\t1\t1\t0.029\tzymogen granule membrane\n\n1\t1\t1\t0.029\tvitelline membrane formation\n\n1\t1\t1\t0.029\tvitamin metabolic process\n\n1\t1\t1\t0.029\tvitamin E biosynthetic process\n", "update_time": "2013-06-17 05:25:40.609246", "name": "(Method 2) Rank GO terms Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": 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"2013-06-17 05:50:52.488561", "name": "(Method 2) Rank Terms on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in ABC-GRZ (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Terms_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_ABC-GRZ_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:50:31.067241", "hid": 78, "parent_id": null, "annotation": "None", "blurb": "137 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 137, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with (c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1) and c5.find('oxidative')==-1, \r\nkept 3.00% of 200 valid lines (200 total lines).\r\n", "peek": "1\t1\t1\t0.021\tnitric oxide production involved in inflammatory response\n\n1\t1\t1\t0.021\tnitric oxide metabolic process\n\n1\t1\t1\t0.021\theme-transporting ATPase activity\n\n1\t0.5\t2\t0.042\tnitric-oxide synthase activity\n\n1\t0.5\t2\t0.042\tATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity\n\n3\t0.077\t29\t0.050\toxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen\n", "update_time": "2013-06-17 05:58:00.184646", "name": "(Method 2) Rank Terms on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in Polar (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Terms_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_Polar_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:57:46.323221", "hid": 81, "parent_id": null, "annotation": "None", "blurb": "6 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 6, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with (c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1) and c5.find('oxidative')==-1, \r\nkept 5.11% of 137 valid lines (137 total lines).\r\n", "peek": "1\t1\t1\t0.0092\tnitric oxide metabolic process\n\n1\t0.5\t2\t0.018\textrinsic to mitochondrial inner membrane\n\n1\t0.5\t2\t0.018\tATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity\n\n1\t0.33\t3\t0.027\tmitochondrial translation\n\n1\t0.33\t3\t0.027\tmitochondrial part\n\n1\t0.25\t4\t0.036\tpositive regulation of nitric-oxide synthase biosynthetic process\n", "update_time": "2013-06-17 05:58:59.640569", "name": "(Method 2) Rank Terms on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in ABC-GRZ (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Terms_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_ABC-GRZ_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 05:58:42.767480", "hid": 82, "parent_id": null, "annotation": "None", "blurb": "7 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 7, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "chr1\t101020385\tENSCAFT00000003500\tENSCAFP00000003246\tC\t523\tR\t86.7\t1079\t476357\t101020385chr1\t476357\tN\tdamaging\t101020385chr1\t476357\tN\n\nchr30\t10462254\tENSCAFT00000014399\tENSCAFP00000013316\tQ\t1156\tE\t88.1\t184\t100856190\t10462254chr30\t487491\tcfa00562=Inositol phosphate metabolism.cfa01100=Metabolic pathways.cfa04020=Calcium signaling pathway.cfa04062=Chemokine signaling pathway.cfa04070=Phosph\natidylinositol signaling system.cfa04270=Vascular smooth muscle contraction.cfa04310=Wnt signaling pathway.cfa04540=Gap junction.cfa04720=Long-term potentiation.cfa04724=Glutamatergic synapse.cfa04725=Cholinergic synapse.cfa04728=Dopaminergic synapse.cfa04\n730=Long-term depression.cfa04912=GnRH signaling pathway.cfa04916=Melanogenesis.cfa04961=Endocrine and other factor-regulated calcium reabsorption.cfa04970=Salivary secretion.cfa04971=Gastric acid secretion.cfa04972=Pancreatic secretion.cfa05010=Alzheimer'\ns disease.cfa05016=Huntington's disease.cfa05142=Chagas disease (American trypanosomiasis).cfa05143=African trypanosomiasis.cfa05146=Amoebiasis\tdamaging\t10462254chr30\t487491\tcfa00562=Inositol phosphate metabolism.cfa01100=Metabolic pathways.cfa04020=Calciu\nm signaling pathway.cfa04062=Chemokine signaling pathway.cfa04070=Phosphatidylinositol signaling system.cfa04270=Vascular smooth muscle contraction.cfa04310=Wnt signaling pathway.cfa04540=Gap junction.cfa04720=Long-term potentiation.cfa04724=Glutamatergic ", "update_time": "2013-06-17 06:04:14.775219", "name": "(Method 2) Get Pathways on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in Polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Get_Pathways_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_Polar.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 06:03:48.581438", "hid": 83, "parent_id": null, "annotation": "None", "blurb": "409 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 409, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "str", "str", "str", "str", "str"], "columns": 17}}, {"info": "", "peek": "chr1\t102877196\tENSCAFT00000003748\tENSCAFP00000003466\tT\t210\tA\t90.3\t83\tU\t102877196chr1\tU\tN\tdamaging\t102877196chr1\tU\tN\n\nchr13\t10623946\tENSCAFT00000001063\tENSCAFP00000000975\tR\t21\tC\t92.3\t614\t100856177\t10623946chr13\t481999\tN\tdamaging\t10623946chr13\t481999\tN\n\nchr1\t112367856\tENSCAFT00000006973\tENSCAFP00000006455\tG\t461\tS\t92.3\t252\t476429\t112367856chr1\t476429\tN\tdamaging\t112367856chr1\t476429\tN\n\nchr1\t112824747\tENSCAFT00000007105\tENSCAFP00000006579\tE\t584\tG\t95.2\t117\t476434\t112824747chr1\t476434\tN\tdamaging\t112824747chr1\t476434\tN\n\nchr1\t115898804\tENSCAFT00000008166\tENSCAFP00000007564\tG\t103\tA\t94.5\t152\t476453\t115898804chr1\t476453\tN\tdamaging\t115898804chr1\t476453\tN\n\nchr28\t11855084\tENSCAFT00000013202\tENSCAFP00000012217\tI\t1047\tM\t93.7\t623\t100686806\t11855084chr28\tU\tN\tdamaging\t11855084chr28\tU\tN\n", "update_time": "2013-06-17 06:04:53.223853", "name": "(Method 2) Get Pathways on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Get_Pathways_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_ABC-GRZ.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 06:04:37.342518", "hid": 84, "parent_id": null, "annotation": "None", "blurb": "170 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 170, "column_types": ["str", "int", "str", "str", "str", "int", "str", "float", "int", "str", "str", "str", "str", "str", "str", "str", "str"], "columns": 17}}, {"info": "", "peek": "1\t0.11\t1\t0.11\tcfa00062=Fatty acid elongation\n\n1\t0.091\t2\t0.14\tcfa00790=Folate biosynthesis\n\n1\t0.083\t3\t0.15\tcfa00740=Riboflavin metabolism\n\n3\t0.081\t4\t0.013\tcfa04973=Carbohydrate digestion and absorption\n\n2\t0.08\t5\t0.043\tcfa00534=Glycosaminoglycan biosynthesis - heparan sulfate\n\n2\t0.077\t6\t0.046\tcfa00052=Galactose metabolism\n", "update_time": "2013-06-17 06:08:17.653018", "name": "(Method 2) Rank Pathways on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in Polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Pathways_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_Polar.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 06:06:14.359373", "hid": 85, "parent_id": null, "annotation": "None", "blurb": "241 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 241, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 3.73% of 241 valid lines (241 total lines).\r\n", "peek": "3\t0.081\t4\t0.013\tcfa04973=Carbohydrate digestion and absorption\n\n2\t0.08\t5\t0.043\tcfa00534=Glycosaminoglycan biosynthesis - heparan sulfate\n\n2\t0.077\t6\t0.046\tcfa00052=Galactose metabolism\n\n3\t0.059\t8\t0.030\tcfa04340=Hedgehog signaling pathway\n\n3\t0.055\t11\t0.037\tcfa00562=Inositol phosphate metabolism\n\n3\t0.054\t12\t0.038\tcfa00330=Arginine and proline metabolism\n", "update_time": "2013-06-17 06:07:29.087942", "name": "(Method 2) Rank Pathways on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in Polar (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Pathways_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_Polar_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 06:07:03.775580", "hid": 86, "parent_id": null, "annotation": "None", "blurb": "9 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 9, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "2\t0.15\t1\t0.0020\tcfa00900=Terpenoid backbone biosynthesis\n\n1\t0.12\t2\t0.040\tcfa00072=Synthesis and degradation of ketone bodies\n\n1\t0.083\t3\t0.059\tcfa03450=Non-homologous end-joining\n\n1\t0.059\t4\t0.083\tcfa04614=Renin-angiotensin system\n\n3\t0.045\t5\t0.0049\tcfa04920=Adipocytokine signaling pathway\n\n2\t0.043\t6\t0.024\tcfa00520=Amino sugar and nucleotide sugar metabolism\n", "update_time": "2013-06-17 06:09:04.328913", "name": "(Method 2) Rank Pathways on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Pathways_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_ABC-GRZ.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 06:08:45.512516", "hid": 87, "parent_id": null, "annotation": "None", "blurb": "241 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 241, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 2.49% of 241 valid lines (241 total lines).\r\n", "peek": "2\t0.15\t1\t0.0020\tcfa00900=Terpenoid backbone biosynthesis\n\n1\t0.12\t2\t0.040\tcfa00072=Synthesis and degradation of ketone bodies\n\n3\t0.045\t5\t0.0049\tcfa04920=Adipocytokine signaling pathway\n\n2\t0.043\t6\t0.024\tcfa00520=Amino sugar and nucleotide sugar metabolism\n\n2\t0.036\t11\t0.032\tcfa00562=Inositol phosphate metabolism\n\n2\t0.035\t13\t0.035\tcfa04622=RIG-I-like receptor signaling pathway\n", "update_time": "2013-06-17 06:09:53.467960", "name": "(Method 2) Rank Pathways on Polyphen Damaging prediction on Genes with fixed different alleles in Polar and ABC-GRZ bears formatted derived in ABC-GRZ (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_2)_Rank_Pathways_on_Polyphen_Damaging_prediction_on_Genes_with_fixed_different_alleles_in_Polar_and_ABC-GRZ_bears_formatted_derived_in_ABC-GRZ_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 06:09:34.976395", "hid": 88, "parent_id": null, "annotation": "None", "blurb": "6 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 6, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "uploaded tabular file", "peek": "ENSEMBL code\tdn_ABC+GRZ\tds_ABC+GRZ\tdn/ds_ABC+GRZ\tt-val_ABC+GRZ\tp_ABC+GRZ\tdn_black\tds_black\tdn/ds_black\tt-val_black\tp_black\tdn_polar\tds_polar\tdn/ds_polar\tt-val_polar\tp_polar\n\nENSCAFT00000000012\t1e-15\t0.00170357824524\t5.86999747618e-13\t-1.99744563096\t0.0457767420292\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.00170357824524\t5.86999747618e-13\t-1.99744563096\t0.0457767420292\n\nENSCAFT00000000013\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.00136518809025\t7.32499797749e-13\t-1.9618018482\t0.0497855068521\n\nENSCAFT00000000014\t1e-15\t0.00125287145443\t7.98166481055e-13\t-2.04128306758\t0.0412226895088\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\n\nENSCAFT00000000024\t1e-15\t0.00532861921781\t1.87665877242e-13\t-2.01757353633\t0.0436356642908\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\n\nENSCAFT00000000028\t1e-15\t0.00237969528043\t4.20221869675e-13\t-3.6092013682\t0.000307140919555\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.00317460791447\t3.14999529688e-13\t-4.16699176528\t3.08645285187e-05\n", "update_time": "2013-06-17 23:49:40.126290", "name": "(Method 3) coding SNPs fixed Polar and ABC-GRZ KaKs", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3)_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs.tabular", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-17 23:45:14.841654", "hid": 89, "parent_id": null, "annotation": "None", "blurb": "4,154 lines", "metadata": {"column_names": null, "comment_lines": "1", "dbkey": "canFam2", "data_lines": 4154, "column_types": ["str", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float"], "columns": 16}}, {"info": "Filtering with c14>1.0, \r\nkept 17.36% of 4154 valid lines (4154 total lines).\r\nSkipped 1 invalid line(s) starting at line #1: \"ENSEMBL code\tdn_ABC+GRZ\tds_ABC+GRZ\tdn/ds_ABC+GRZ\tt-val_ABC+GRZ\tp_ABC+GRZ\tdn_black\tds_black\tdn/ds_black\tt-val_black\tp_black\tdn_po", "peek": "ENSCAFT00000000145\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.00131550132389\t1e-15\t1.31550132389e+12\t1.14734428626\t0.251239919815\n\nENSCAFT00000000160\t1e-15\t0.0018668335712\t5.35666390098e-13\t-1.9653816263\t0.0493700596902\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.0013049155097\t1e-15\t1.3049155097e+12\t1.6436426387\t0.100250536931\n\nENSCAFT00000000338\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.000765696850581\t1e-15\t7.65696850581e+11\t1.15481076415\t0.248168384725\n\nENSCAFT00000000358\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.000572792390611\t1e-15\t5.72792390611e+11\t1.16257830489\t0.245000965471\n\nENSCAFT00000000386\t0.000864428852358\t0.00234833851348\t0.368102318893\t-1.04093091214\t0.297907883956\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.00086405539511\t1e-15\t8.6405539511e+11\t1.16939360546\t0.242245458491\n\nENSCAFT00000000403\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.000831485672749\t1e-15\t8.31485672749e+11\t1.13843723692\t0.254938257162\n", "update_time": "2013-06-17 23:49:12.364535", "name": "(Method 3A) coding SNPs fixed Polar and ABC-GRZ KaKs>1 in polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_polar.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 23:48:08.760619", "hid": 90, "parent_id": null, "annotation": "None", "blurb": "721 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 721, "column_types": ["str", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float"], "columns": 16}}, {"info": "Filtering with c4>1.0, \r\nkept 10.28% of 4154 valid lines (4154 total lines).\r\nSkipped 1 invalid line(s) starting at line #1: \"ENSEMBL code\tdn_ABC+GRZ\tds_ABC+GRZ\tdn/ds_ABC+GRZ\tt-val_ABC+GRZ\tp_ABC+GRZ\tdn_black\tds_black\tdn/ds_black\tt-val_black\tp_black\tdn_pol", "peek": "ENSCAFT00000000131\t0.000546697062932\t1e-15\t5.46697062932e+11\t1.14156023122\t0.253637270251\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\n\nENSCAFT00000000213\t0.00216606648756\t1e-15\t2.16606648756e+12\t1.16133518909\t0.245505925784\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.00644472279212\t1.55165711894e-13\t-1.99890791877\t0.0456182932232\n\nENSCAFT00000000220\t0.00022680022853\t1e-15\t2.2680022853e+11\t1.14758743611\t0.251139203957\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.00143163966162\t6.98499787905e-13\t-2.88150368309\t0.00395782316588\n\nENSCAFT00000000295\t9.5797675441e-05\t1e-15\t95797675441.0\t1.14157879781\t0.253629585688\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.000316539176422\t3.15916661976e-12\t-2.07488603452\t0.0379970499696\n\nENSCAFT00000000337\t0.00168800183788\t1e-15\t1.68800183788e+12\t1.57550990071\t0.115139313552\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\n\nENSCAFT00000000400\t0.00108303267918\t1e-15\t1.08303267918e+12\t1.17308396069\t0.240762577086\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\n", "update_time": "2013-06-17 23:50:20.698514", "name": "(Method 3A) coding SNPs fixed Polar and ABC-GRZ KaKs>1 in ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_ABC-GRZ.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 23:50:07.199378", "hid": 91, "parent_id": null, "annotation": "None", "blurb": "427 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 427, "column_types": ["str", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float"], "columns": 16}}, {"info": "None", "peek": "2\t1\t1\t0.0019\tpeptidyl-lysine trimethylation\n\n2\t1\t1\t0.0019\tcellular response to potassium ion\n\n1\t1\t1\t0.044\tzymogen granule membrane\n\n1\t1\t1\t0.044\tvitelline membrane formation\n\n1\t1\t1\t0.044\tvitamin metabolic process\n\n1\t1\t1\t0.044\tvitamin E biosynthetic process\n", "update_time": "2013-06-17 23:52:11.570658", "name": "(Method 3A) Rank Terms on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Terms_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_polar.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 23:51:33.014667", "hid": 92, "parent_id": null, "annotation": "None", "blurb": "10,458 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 10458, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 2.29% of 10458 valid lines (10458 total lines).\r\n", "peek": "2\t1\t1\t0.0019\tpeptidyl-lysine trimethylation\n\n2\t1\t1\t0.0019\tcellular response to potassium ion\n\n1\t1\t1\t0.044\tzymogen granule membrane\n\n1\t1\t1\t0.044\tvitelline membrane formation\n\n1\t1\t1\t0.044\tvitamin metabolic process\n\n1\t1\t1\t0.044\tvitamin E biosynthetic process\n", "update_time": "2013-06-17 23:53:11.113042", "name": "(Method 3A) Rank Terms on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in polar (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Terms_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_polar_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 23:52:52.075361", "hid": 93, "parent_id": null, "annotation": "None", "blurb": "240 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 240, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "2\t1\t1\t0.00059\tnuclear migration along microfilament\n\n1\t1\t1\t0.024\ttyrosine 3-monooxygenase activity\n\n1\t1\t1\t0.024\ttRNA aminoacylation for mitochondrial protein translation\n\n1\t1\t1\t0.024\tsteroid hormone receptor complex assembly\n\n1\t1\t1\t0.024\tspindle assembly checkpoint\n\n1\t1\t1\t0.024\tsour taste receptor activity\n", "update_time": "2013-06-17 23:55:31.592210", "name": "(Method 3A) Rank Terms on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Terms_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_ABC-GRZ.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 23:55:10.546016", "hid": 94, "parent_id": null, "annotation": "None", "blurb": "10,458 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 10458, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 2.62% of 10458 valid lines (10458 total lines).\r\n", "peek": "2\t1\t1\t0.00059\tnuclear migration along microfilament\n\n1\t1\t1\t0.024\ttyrosine 3-monooxygenase activity\n\n1\t1\t1\t0.024\ttRNA aminoacylation for mitochondrial protein translation\n\n1\t1\t1\t0.024\tsteroid hormone receptor complex assembly\n\n1\t1\t1\t0.024\tspindle assembly checkpoint\n\n1\t1\t1\t0.024\tsour taste receptor activity\n", "update_time": "2013-06-17 23:56:06.817026", "name": "(Method 3A) Rank Terms on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in ABC-GRZ (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Terms_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_ABC-GRZ_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-17 23:55:48.279523", "hid": 95, "parent_id": null, "annotation": "None", "blurb": "274 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 274, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "ENSCAFT00000000145\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.00131550132389\t1e-15\t1.31550132389e+12\t1.14734428626\t0.251239919815\t483961\tcfa04080=Neuroactive ligand-receptor interaction\n\nENSCAFT00000000160\t1e-15\t0.0018668335712\t5.35666390098e-13\t-1.9653816263\t0.0493700596902\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.0013049155097\t1e-15\t1.3049155097e+12\t1.6436426387\t0.100250536931\t610160\tN\n\nENSCAFT00000000338\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.000765696850581\t1e-15\t7.65696850581e+11\t1.15481076415\t0.248168384725\t483994\tN\n\nENSCAFT00000000358\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.000572792390611\t1e-15\t5.72792390611e+11\t1.16257830489\t0.245000965471\t474413\tN\n\nENSCAFT00000000386\t0.000864428852358\t0.00234833851348\t0.368102318893\t-1.04093091214\t0.297907883956\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.00086405539511\t1e-15\t8.6405539511e+11\t1.16939360546\t0.242245458491\tU\tN\n\nENSCAFT00000000403\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t0.000831485672749\t1e-15\t8.31485672749e+11\t1.13843723692\t0.254938257162\t484002\tcfa04060=Cytokine-cytokine receptor interaction.cfa04630=Jak-STAT signaling pathway\n", "update_time": "2013-06-18 00:01:53.008594", "name": "(Method 3A) Get Pathways on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Get_Pathways_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_polar.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-17 23:57:45.883998", "hid": 96, "parent_id": null, "annotation": "None", "blurb": "721 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 721, "column_types": ["str", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "str", "str"], "columns": 18}}, {"info": "None", "peek": "ENSCAFT00000000131\t0.000546697062932\t1e-15\t5.46697062932e+11\t1.14156023122\t0.253637270251\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t474393\tcfa00561=Glycerolipid metabolism.cfa00564=Glycerophospholipid metabolism.cfa01100=Metabolic pathways.cfa04070=P\nhosphatidylinositol signaling system\n\nENSCAFT00000000213\t0.00216606648756\t1e-15\t2.16606648756e+12\t1.16133518909\t0.245505925784\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.00644472279212\t1.55165711894e-13\t-1.99890791877\t0.0456182932232\t481113\tN\n\nENSCAFT00000000220\t0.00022680022853\t1e-15\t2.2680022853e+11\t1.14758743611\t0.251139203957\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.00143163966162\t6.98499787905e-13\t-2.88150368309\t0.00395782316588\t481116\tN\n\nENSCAFT00000000295\t9.5797675441e-05\t1e-15\t95797675441.0\t1.14157879781\t0.253629585688\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t0.000316539176422\t3.15916661976e-12\t-2.07488603452\t0.0379970499696\tU\tN\n\nENSCAFT00000000337\t0.00168800183788\t1e-15\t1.68800183788e+12\t1.57550990071\t0.115139313552\t1e-15\t1e-15\t1.0\t0.0\t1.0\t1e-15\t1e-15\t1.0\t0.0\t1.0\t474638\tN\n", "update_time": "2013-06-18 00:02:32.834266", "name": "(Method 3A) Get Pathways on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Get_Pathways_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_ABC-GRZ.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-18 00:02:15.630008", "hid": 97, "parent_id": null, "annotation": "None", "blurb": "427 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 427, "column_types": ["str", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "float", "str", "str"], "columns": 18}}, {"info": "", "peek": "1\t0.33\t1\t0.076\tcfa00300=Lysine biosynthesis\n\n3\t0.12\t2\t0.030\tcfa03440=Homologous recombination\n\n3\t0.12\t2\t0.027\tcfa00650=Butanoate metabolism\n\n3\t0.12\t2\t0.027\tcfa00534=Glycosaminoglycan biosynthesis - heparan sulfate\n\n2\t0.12\t2\t0.064\tcfa00120=Primary bile acid biosynthesis\n\n1\t0.12\t2\t0.19\tcfa00072=Synthesis and degradation of ketone bodies\n", "update_time": "2013-06-18 00:03:44.054793", "name": "(Method 3A) Rank Pathways on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in polar", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Pathways_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_polar.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-18 00:03:13.998760", "hid": 98, "parent_id": null, "annotation": "None", "blurb": "241 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 241, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 7.47% of 241 valid lines (241 total lines).\r\n", "peek": "3\t0.12\t2\t0.030\tcfa03440=Homologous recombination\n\n3\t0.12\t2\t0.027\tcfa00650=Butanoate metabolism\n\n3\t0.12\t2\t0.027\tcfa00534=Glycosaminoglycan biosynthesis - heparan sulfate\n\n4\t0.098\t9\t0.022\tcfa02010=ABC transporters\n\n7\t0.097\t10\t0.0028\tcfa03320=PPAR signaling pathway\n\n6\t0.095\t11\t0.0061\tcfa04976=Bile secretion\n", "update_time": "2013-06-18 00:04:15.564385", "name": "(Method 3A) Rank Pathways on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in polar (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Pathways_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_polar_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 00:03:59.406937", "hid": 99, "parent_id": null, "annotation": "None", "blurb": "18 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 18, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "", "peek": "4\t0.21\t1\t0.00022\tcfa01040=Biosynthesis of unsaturated fatty acids\n\n2\t0.15\t2\t0.018\tcfa00900=Terpenoid backbone biosynthesis\n\n2\t0.12\t3\t0.030\tcfa04614=Renin-angiotensin system\n\n1\t0.12\t3\t0.12\tcfa00072=Synthesis and degradation of ketone bodies\n\n3\t0.094\t5\t0.015\tcfa04744=Phototransduction\n\n1\t0.091\t6\t0.16\tcfa00790=Folate biosynthesis\n", "update_time": "2013-06-18 00:05:28.506757", "name": "(Method 3A) Rank Pathways on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in ABC-GRZ", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Pathways_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_ABC-GRZ.tabular", "deleted": false, "designation": "output", "visible": true, "create_time": "2013-06-18 00:05:03.898433", "hid": 100, "parent_id": null, "annotation": "None", "blurb": "241 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 241, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with c4<=0.05, \r\nkept 6.22% of 241 valid lines (241 total lines).\r\n", "peek": "4\t0.21\t1\t0.00022\tcfa01040=Biosynthesis of unsaturated fatty acids\n\n2\t0.15\t2\t0.018\tcfa00900=Terpenoid backbone biosynthesis\n\n2\t0.12\t3\t0.030\tcfa04614=Renin-angiotensin system\n\n3\t0.094\t5\t0.015\tcfa04744=Phototransduction\n\n6\t0.071\t8\t0.0027\tcfa05410=Hypertrophic cardiomyopathy (HCM)\n\n5\t0.066\t10\t0.0081\tcfa04146=Peroxisome\n", "update_time": "2013-06-18 00:06:01.540550", "name": "(Method 3A) Rank Pathways on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in ABC-GRZ (statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Pathways_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_ABC-GRZ_(statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 00:05:44.860801", "hid": 101, "parent_id": null, "annotation": "None", "blurb": "15 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 15, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with (c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1) and c5.find('oxidative')==-1, \r\nkept 4.58% of 240 valid lines (240 total lines).\r\n", "peek": "1\t1\t1\t0.044\tvacuolar proton-transporting V-type ATPase complex assembly\n\n1\t1\t1\t0.044\toxygen-dependent protoporphyrinogen oxidase activity\n\n1\t1\t1\t0.044\tnitric oxide production involved in inflammatory response\n\n1\t1\t1\t0.044\tnitric oxide metabolic process\n\n1\t1\t1\t0.044\tmitochondrial alpha-ketoglutarate dehydrogenase complex\n\n1\t1\t1\t0.044\tintrinsic to mitochondrial inner membrane\n", "update_time": "2013-06-18 00:07:30.575138", "name": "(Method 3A) Rank Terms on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in polar (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Terms_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_polar_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 00:07:07.757524", "hid": 102, "parent_id": null, "annotation": "None", "blurb": "11 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 11, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with (c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1) and c5.find('oxidative')==-1 and c5.find('oxidase')==-1, \r\nkept 4.74% of 274 valid l", "peek": "1\t1\t1\t0.024\ttRNA aminoacylation for mitochondrial protein translation\n\n1\t1\t1\t0.024\tnitric oxide metabolic process\n\n1\t1\t1\t0.024\tmitochondrial mRNA polyadenylation\n\n1\t1\t1\t0.024\tmitochondrial RNA catabolic process\n\n1\t1\t1\t0.024\tmitochondrial RNA 5'-end processing\n\n1\t1\t1\t0.024\tRNA import into mitochondrion\n", "update_time": "2013-06-18 00:10:30.749080", "name": "(Method 3A) Rank Terms on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in ABC-GRZ (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Terms_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_ABC-GRZ_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 00:10:20.520227", "hid": 104, "parent_id": null, "annotation": "None", "blurb": "13 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 13, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with (c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1) and c5.find('oxidative')==-1, \r\nkept 5.56% of 18 valid lines (18 total lines).\r\n", "peek": "0\t0\t177\t0.035\tcfa00190=Oxidative phosphorylation\n\n\n\n\n\n", "update_time": "2013-06-18 00:24:42.663352", "name": "(Method 3A) Rank Pathways on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in polar (statistically significant) associated to Cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Pathways_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_polar_(statistically_significant)_associated_to_Cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 00:22:48.437207", "hid": 105, "parent_id": null, "annotation": "None", "blurb": "1 line", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 1, "column_types": ["int", "int", "int", "float", "str"], "columns": 5}}, {"info": "Filtering with (c5.find('ATP')>-1 or c5.find('oxid')>-1 or c5.find('energ')>-1 or c5.find('mitoc')>-1 or c5.find('Oxid')>-1 or c5.find('Energ')>-1 or c5.find('Mitoc')>-1) and c5.find('oxidative')==-1, \r\nkept 0.00% of 15 valid lines (15 total lines).\r\n", "peek": "no peek", "update_time": "2013-06-18 00:25:35.470275", "name": "(Method 3A) Rank Pathways on coding SNPs fixed Polar and ABC-GRZ KaKs>1 in ABC-GRZ (statistically significant) associated to cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3A)_Rank_Pathways_on_coding_SNPs_fixed_Polar_and_ABC-GRZ_KaKs_1_in_ABC-GRZ_(statistically_significant)_associated_to_cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 00:25:11.507490", "hid": 106, "parent_id": null, "annotation": "None", "blurb": "empty", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 15, "column_types": ["int", "float", "int", "float", "str"], "columns": 5}}, {"info": "uploaded tabular file", "peek": "polar_ABC+GRZ\tBile secretion\t18\t265298562743.0\t0.435046133126\t89.0\t0.009706903976\tENSCAFT00000003704.ENSCAFT00000003971.ENSCAFT00000004976.ENSCAFT00000006552.ENSCAFT00000007465.ENSCAFT00000008769.ENSCAFT00000011373.ENSCAFT00000015149.ENSCAFT00000015776.ENS\nCAFT00000019177.ENSCAFT00000019466.ENSCAFT00000019757.ENSCAFT00000020561.ENSCAFT00000021332.ENSCAFT00000027259.ENSCAFT00000027704.ENSCAFT00000029367.ENSCAFT00000037977\tpolar\n\npolar_ABC+GRZ\tCell cycle\t19\t132919410090.0\t0.759699050046\t90.5\t0.00379852992534\tENSCAFT00000001725.ENSCAFT00000001862.ENSCAFT00000003425.ENSCAFT00000003463.ENSCAFT00000004945.ENSCAFT00000005562.ENSCAFT00000010616.ENSCAFT00000010664.ENSCAFT00000011883.ENSCA\nFT00000014969.ENSCAFT00000016879.ENSCAFT00000018932.ENSCAFT00000021002.ENSCAFT00000023166.ENSCAFT00000025560.ENSCAFT00000026465.ENSCAFT00000030508.ENSCAFT00000030570.ENSCAFT00000030976\tpolar\n\npolar_ABC+GRZ\tHepatitis C\t16\t123721615870.0\t0.645352706277\t75.5\t0.022045853716\tENSCAFT00000000897.ENSCAFT00000006305.ENSCAFT00000010257.ENSCAFT00000014017.ENSCAFT00000014032.ENSCAFT00000014194.ENSCAFT00000014202.ENSCAFT00000015231.ENSCAFT00000017863.ENSCAF\nT00000024017.ENSCAFT00000026465.ENSCAFT00000027550.ENSCAFT00000027678.ENSCAFT00000029177.ENSCAFT00000031062.ENSCAFT00000039509\tpolar\n", "update_time": "2013-06-18 16:42:55.024389", "name": "(Method 3B) Pathways with average KaKs polar and ABC-GRZ (UMannW statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_Pathways_with_average_KaKs_polar_and_ABC-GRZ_(UMannW_statistically_significant).tabular", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-18 16:39:52.666294", "hid": 114, "parent_id": null, "annotation": "None", "blurb": "10 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 10, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "uploaded tabular file", "peek": "polar_ABC+GRZ\tDNA recombination\t4\t204610578211.0\t0.25\t2.0\t0.0397746675045\tENSCAFT00000001353.ENSCAFT00000007174.ENSCAFT00000009725.ENSCAFT00000010949\tpolar\n\npolar_ABC+GRZ\tGolgi membrane\t15\t61287795712.4\t0.422966268894\t72.0\t0.0431081880079\tENSCAFT00000005661.ENSCAFT00000007546.ENSCAFT00000008956.ENSCAFT00000009848.ENSCAFT00000011305.ENSCAFT00000011885.ENSCAFT00000014931.ENSCAFT00000015692.ENSCAFT00000017086.ENS\nCAFT00000020534.ENSCAFT00000021291.ENSCAFT00000028560.ENSCAFT00000028873.ENSCAFT00000031040.ENSCAFT00000031269\tpolar\n\npolar_ABC+GRZ\tRNA metabolic process\t4\t133262265738.0\t0.0843533018575\t0.0\t0.0102702403156\tENSCAFT00000003862.ENSCAFT00000014352.ENSCAFT00000024618.ENSCAFT00000030290\tpolar\n\npolar_ABC+GRZ\tT cell differentiation in thymus\t10\t81844231284.2\t0.743428195087\t23.5\t0.0208675336957\tENSCAFT00000005426.ENSCAFT00000005687.ENSCAFT00000008272.ENSCAFT00000009725.ENSCAFT00000010616.ENSCAFT00000010949.ENSCAFT00000023308.ENSCAFT00000026465.ENSC\nAFT00000030498.ENSCAFT00000030997\tpolar\n", "update_time": "2013-06-18 16:44:56.791409", "name": "(Method 3B) GO terms with average KaKs polar and ABC-GRZ (UMannW statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_GO_terms_with_average_KaKs_polar_and_ABC-GRZ_(UMannW_statistically_significant).tabular", "deleted": false, "designation": null, "visible": true, "create_time": "2013-06-18 16:44:40.190950", "hid": 115, "parent_id": null, "annotation": "None", "blurb": "114 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 114, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "Filtering with c9.find('polar')>-1, \r\nkept 50.00% of 10 valid lines (10 total lines).\r\n", "peek": "polar_ABC+GRZ\tBile secretion\t18\t265298562743.0\t0.435046133126\t89.0\t0.009706903976\tENSCAFT00000003704.ENSCAFT00000003971.ENSCAFT00000004976.ENSCAFT00000006552.ENSCAFT00000007465.ENSCAFT00000008769.ENSCAFT00000011373.ENSCAFT00000015149.ENSCAFT00000015776.ENS\nCAFT00000019177.ENSCAFT00000019466.ENSCAFT00000019757.ENSCAFT00000020561.ENSCAFT00000021332.ENSCAFT00000027259.ENSCAFT00000027704.ENSCAFT00000029367.ENSCAFT00000037977\tpolar\n\npolar_ABC+GRZ\tCell cycle\t19\t132919410090.0\t0.759699050046\t90.5\t0.00379852992534\tENSCAFT00000001725.ENSCAFT00000001862.ENSCAFT00000003425.ENSCAFT00000003463.ENSCAFT00000004945.ENSCAFT00000005562.ENSCAFT00000010616.ENSCAFT00000010664.ENSCAFT00000011883.ENSCA\nFT00000014969.ENSCAFT00000016879.ENSCAFT00000018932.ENSCAFT00000021002.ENSCAFT00000023166.ENSCAFT00000025560.ENSCAFT00000026465.ENSCAFT00000030508.ENSCAFT00000030570.ENSCAFT00000030976\tpolar\n\npolar_ABC+GRZ\tHepatitis C\t16\t123721615870.0\t0.645352706277\t75.5\t0.022045853716\tENSCAFT00000000897.ENSCAFT00000006305.ENSCAFT00000010257.ENSCAFT00000014017.ENSCAFT00000014032.ENSCAFT00000014194.ENSCAFT00000014202.ENSCAFT00000015231.ENSCAFT00000017863.ENSCAF\nT00000024017.ENSCAFT00000026465.ENSCAFT00000027550.ENSCAFT00000027678.ENSCAFT00000029177.ENSCAFT00000031062.ENSCAFT00000039509\tpolar\n", "update_time": "2013-06-18 17:03:12.145233", "name": "(Method 3B) Pathways with average KaKs polar > ABC-GRZ (UMannW statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_Pathways_with_average_KaKs_polar___ABC-GRZ_(UMannW_statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 17:02:38.618558", "hid": 123, "parent_id": null, "annotation": "None", "blurb": "5 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 5, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "Filtering with c9.find('ABC-GRZ')>-1, \r\nkept 50.00% of 10 valid lines (10 total lines).\r\n", "peek": "polar_ABC+GRZ\tArrhythmogenic right ventricular cardiomyopathy (ARVC)\t22\t0.252258414351\t192576679701.0\t99.5\t0.000331244771989\tENSCAFT00000000090.ENSCAFT00000004270.ENSCAFT00000006184.ENSCAFT00000009445.ENSCAFT00000011472.ENSCAFT00000012528.ENSCAFT0000001412\n6.ENSCAFT00000015962.ENSCAFT00000016656.ENSCAFT00000017321.ENSCAFT00000017810.ENSCAFT00000018075.ENSCAFT00000021853.ENSCAFT00000022461.ENSCAFT00000023277.ENSCAFT00000025343.ENSCAFT00000027712.ENSCAFT00000027856.ENSCAFT00000029260.ENSCAFT00000029284.ENSCAFT\n00000036842.ENSCAFT00000037064\tABC-GRZ\n\npolar_ABC+GRZ\tNotch signaling pathway\t10\t0.108455424096\t35327367587.5\t19.0\t0.00892494613439\tENSCAFT00000005426.ENSCAFT00000009074.ENSCAFT00000011198.ENSCAFT00000015366.ENSCAFT00000016879.ENSCAFT00000020970.ENSCAFT00000025527.ENSCAFT00000025565.ENSCAFT00000\n030570.ENSCAFT00000031242\tABC-GRZ\n\npolar_ABC+GRZ\tPhototransduction\t8\t0.375\t405607349145.0\t13.0\t0.020738222107\tENSCAFT00000002572.ENSCAFT00000007461.ENSCAFT00000008452.ENSCAFT00000012650.ENSCAFT00000026758.ENSCAFT00000027651.ENSCAFT00000035729.ENSCAFT00000036012\tABC-GRZ\n", "update_time": "2013-06-18 17:04:07.033560", "name": "(Method 3B) Pathways with average KaKs ABC-GRZ > polar (UMannW statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_Pathways_with_average_KaKs_ABC-GRZ___polar_(UMannW_statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 17:03:42.318228", "hid": 124, "parent_id": null, "annotation": "None", "blurb": "5 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 5, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "Filtering with c2.find('ATP')>-1 or c2.find('oxid')>-1 or c2.find('energ')>-1 or c2.find('mitoc')>-1 or c2.find('Oxid')>-1 or c2.find('Energ')>-1 or c2.find('Mitoc')>-1, \r\nkept 0.00% of 5 valid lines (5 total lines).\r\n", "peek": "no peek", "update_time": "2013-06-18 17:11:37.834823", "name": " (Method 3B) Pathways with average KaKs polar > ABC-GRZ (UMannW statistically significant) associated to cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/_(Method_3B)_Pathways_with_average_KaKs_polar___ABC-GRZ_(UMannW_statistically_significant)_associated_to_cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 17:08:51.058283", "hid": 125, "parent_id": null, "annotation": "None", "blurb": "empty", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 5, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "Filtering with c2.find('ATP')>-1 or c2.find('oxid')>-1 or c2.find('energ')>-1 or c2.find('mitoc')>-1 or c2.find('Oxid')>-1 or c2.find('Energ')>-1 or c2.find('Mitoc')>-1, \r\nkept 0.00% of 5 valid lines (5 total lines).\r\n", "peek": "no peek", "update_time": "2013-06-18 17:12:04.201464", "name": "(Method 3B) Pathways with average KaKs ABC-GRZ > polar (UMannW statistically significant) associated to cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_Pathways_with_average_KaKs_ABC-GRZ___polar_(UMannW_statistically_significant)_associated_to_cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 17:11:22.292639", "hid": 126, "parent_id": null, "annotation": "None", "blurb": "empty", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 5, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "Filtering with c9.find('polar')>-1, \r\nkept 38.60% of 114 valid lines (114 total lines).\r\n", "peek": "polar_ABC+GRZ\tDNA recombination\t4\t204610578211.0\t0.25\t2.0\t0.0397746675045\tENSCAFT00000001353.ENSCAFT00000007174.ENSCAFT00000009725.ENSCAFT00000010949\tpolar\n\npolar_ABC+GRZ\tGolgi membrane\t15\t61287795712.4\t0.422966268894\t72.0\t0.0431081880079\tENSCAFT00000005661.ENSCAFT00000007546.ENSCAFT00000008956.ENSCAFT00000009848.ENSCAFT00000011305.ENSCAFT00000011885.ENSCAFT00000014931.ENSCAFT00000015692.ENSCAFT00000017086.ENS\nCAFT00000020534.ENSCAFT00000021291.ENSCAFT00000028560.ENSCAFT00000028873.ENSCAFT00000031040.ENSCAFT00000031269\tpolar\n\npolar_ABC+GRZ\tRNA metabolic process\t4\t133262265738.0\t0.0843533018575\t0.0\t0.0102702403156\tENSCAFT00000003862.ENSCAFT00000014352.ENSCAFT00000024618.ENSCAFT00000030290\tpolar\n\npolar_ABC+GRZ\tT cell differentiation in thymus\t10\t81844231284.2\t0.743428195087\t23.5\t0.0208675336957\tENSCAFT00000005426.ENSCAFT00000005687.ENSCAFT00000008272.ENSCAFT00000009725.ENSCAFT00000010616.ENSCAFT00000010949.ENSCAFT00000023308.ENSCAFT00000026465.ENSC\nAFT00000030498.ENSCAFT00000030997\tpolar\n", "update_time": "2013-06-18 17:13:48.310778", "name": "(Method 3B) GO terms with average KaKs polar > ABC-GRZ (UMannW statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_GO_terms_with_average_KaKs_polar___ABC-GRZ_(UMannW_statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 17:12:58.714109", "hid": 127, "parent_id": null, "annotation": "None", "blurb": "44 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 44, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "Filtering with c9.find('ABC-GRZ')>-1, \r\nkept 61.40% of 114 valid lines (114 total lines).\r\n", "peek": "polar_ABC+GRZ\tC2H2 zinc finger domain binding\t4\t0.5\t517373470402.0\t2.0\t0.0369029492877\tENSCAFT00000004031.ENSCAFT00000006644.ENSCAFT00000011914.ENSCAFT00000017891\tABC-GRZ\n\npolar_ABC+GRZ\tRac guanyl-nucleotide exchange factor activity\t6\t0.166666666667\t43850994771.8\t7.0\t0.0364365771562\tENSCAFT00000006766.ENSCAFT00000011396.ENSCAFT00000012231.ENSCAFT00000019642.ENSCAFT00000026895.ENSCAFT00000029523\tABC-GRZ\n\npolar_ABC+GRZ\tacetyltransferase activity\t5\t8.11699688622e-13\t45742167009.2\t2.0\t0.0136613341731\tENSCAFT00000008642.ENSCAFT00000009358.ENSCAFT00000024383.ENSCAFT00000026659.ENSCAFT00000030570\tABC-GRZ\n\npolar_ABC+GRZ\talpha-actinin binding\t3\t0.139380507967\t515484061932.0\t0.0\t0.0247673068842\tENSCAFT00000014756.ENSCAFT00000015327.ENSCAFT00000017810\tABC-GRZ\n\npolar_ABC+GRZ\tanagen\t3\t4.58304956391e-13\t787712349210.0\t0.0\t0.0247673068842\tENSCAFT00000029177.ENSCAFT00000031242.ENSCAFT00000035558\tABC-GRZ\n\npolar_ABC+GRZ\tanatomical structure morphogenesis\t4\t0.25\t35233598864.5\t1.5\t0.0263849392379\tENSCAFT00000001265.ENSCAFT00000023312.ENSCAFT00000026658.ENSCAFT00000028054\tABC-GRZ\n", "update_time": "2013-06-18 17:17:16.495743", "name": "(Method 3B) GO terms with average KaKs ABC-GRZ > polar (UMannW statistically significant)", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_GO_terms_with_average_KaKs_ABC-GRZ___polar__(UMannW_statistically_significant).tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 17:16:50.853843", "hid": 128, "parent_id": null, "annotation": "None", "blurb": "70 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 70, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "Filtering with c2.find('ATP')>-1 or c2.find('oxid')>-1 or c2.find('energ')>-1 or c2.find('mitoc')>-1 or c2.find('Oxid')>-1 or c2.find('Energ')>-1 or c2.find('Mitoc')>-1, \r\nkept 6.82% of 44 valid lines (44 total lines).\r\n", "peek": "polar_ABC+GRZ\tnegative regulation of nitric-oxide synthase activity\t3\t222345762295.0\t2.15749173872e-13\t0.0\t0.0239505201214\tENSCAFT00000008956.ENSCAFT00000028062.ENSCAFT00000032002\tpolar\n\npolar_ABC+GRZ\toxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen\t11\t311206030516.0\t0.338863827109\t33.0\t0.0343527252862\tENSCAFT00000000446.ENSCAFT00000006437.ENSCAFT00000008128.ENSCAFT00000008161.ENSCAFT000\n00008166.ENSCAFT00000011373.ENSCAFT00000013529.ENSCAFT00000014574.ENSCAFT00000016342.ENSCAFT00000024355.ENSCAFT00000025968\tpolar\n\npolar_ABC+GRZ\toxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen\t4\t234155509671.0\t3.22666170029e-13\t0.0\t0.0097003021354\n8\tENSCAFT00000006437.ENSCAFT00000008128.ENSCAFT00000008161.ENSCAFT00000024355\tpolar\n\n", "update_time": "2013-06-18 17:19:43.360066", "name": "(Method 3B) GO terms with average KaKs polar > ABC-GRZ (UMannW statistically significant) associated to cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_GO_terms_with_average_KaKs_polar___ABC-GRZ_(UMannW_statistically_significant)_associated_to_cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 17:19:23.265222", "hid": 129, "parent_id": null, "annotation": "None", "blurb": "3 lines", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 3, "column_types": ["str", "list", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}, {"info": "Filtering with c2.find('ATP')>-1 or c2.find('oxid')>-1 or c2.find('energ')>-1 or c2.find('mitoc')>-1 or c2.find('Oxid')>-1 or c2.find('Energ')>-1 or c2.find('Mitoc')>-1, \r\nkept 0.00% of 70 valid lines (70 total lines).\r\n", "peek": "no peek", "update_time": "2013-06-18 17:24:04.299024", "name": "(Method 3B) GO terms with average KaKs ABC-GRZ > polar (UMannW statistically significant) associated to cellular respiration", "extension": "tabular", "tags": {}, "__HistoryDatasetAssociation__": true, "file_name": "datasets/(Method_3B)_GO_terms_with_average_KaKs_ABC-GRZ___polar_(UMannW_statistically_significant)_associated_to_cellular_respiration.tabular", "deleted": false, "designation": "out_file1", "visible": true, "create_time": "2013-06-18 17:23:47.164366", "hid": 130, "parent_id": null, "annotation": "None", "blurb": "empty", "metadata": {"column_names": null, "comment_lines": null, "dbkey": "canFam2", "data_lines": 70, "column_types": ["str", "str", "int", "float", "float", "float", "float", "str", "str"], "columns": 9}}]