MISC=../../scripts

AUTOSOMES=1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22
CHROMOSOMES=$(AUTOSOMES) X Y
ALIGN=/depot/data1/cache/human/hg17/align/17way/maf

REF=hg17
SPECIES=hg17,panTro1,rheMac2,mm7,rn3,canFam2,bosTau2
REGIONS=$(CHROMOSOMES)

REORDER=0,1,2,3,4,5,6

MODEL=test_1.063
MODSPEC=tree_pruned:N=10,D=0.01
MODORDER=2

include ../common.mk