Datasetde_results_collapsed
PhenotypeNoPhenotypeAvailable
Upregulated in classna_pos
GeneSetGOBP_CHROMOSOME_ORGANIZATION
Enrichment Score (ES)0.31188688
Normalized Enrichment Score (NES)2.9046156
Nominal p-value0.0
FDR q-value1.13441776E-4
FWER p-Value0.001
Table: GSEA Results Summary



Fig 1: Enrichment plot: GOBP_CHROMOSOME_ORGANIZATION   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1TOXthymocyte selection associated high mobility group box [Source:HGNC Symbol;Acc:HGNC:18988]011.9950.0233Yes
2SATB2SATB homeobox 2 [Source:HGNC Symbol;Acc:HGNC:21637]39.8050.0413Yes
3IRF4interferon regulatory factor 4 [Source:HGNC Symbol;Acc:HGNC:6119]69.3850.0584Yes
4DCLRE1ADNA cross-link repair 1A [Source:HGNC Symbol;Acc:HGNC:17660]247.7310.0643Yes
5H2BC12H2B clustered histone 12 [Source:HGNC Symbol;Acc:HGNC:13954]337.4230.0744Yes
6BLMBLM RecQ like helicase [Source:HGNC Symbol;Acc:HGNC:1058]487.0350.0805Yes
7GFI1growth factor independent 1 transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4237]546.9520.0913Yes
8CCNE2cyclin E2 [Source:HGNC Symbol;Acc:HGNC:1590]1155.8460.0703Yes
9H2AC18H2A clustered histone 18 [Source:HGNC Symbol;Acc:HGNC:4736]1295.7070.0744Yes
10CDKN2Acyclin dependent kinase inhibitor 2A [Source:HGNC Symbol;Acc:HGNC:1787]1545.4380.0720Yes
11PIF1PIF1 5'-to-3' DNA helicase [Source:HGNC Symbol;Acc:HGNC:26220]1565.4180.0820Yes
12H2BC14H2B clustered histone 14 [Source:HGNC Symbol;Acc:HGNC:4750]1745.2080.0829Yes
13TTNtitin [Source:HGNC Symbol;Acc:HGNC:12403]1825.1450.0891Yes
14G3BP1G3BP stress granule assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:30292]1865.1190.0975Yes
15H2BC7H2B clustered histone 7 [Source:HGNC Symbol;Acc:HGNC:4752]1935.0680.1041Yes
16TERF1telomeric repeat binding factor 1 [Source:HGNC Symbol;Acc:HGNC:11728]1965.0560.1128Yes
17H2AC12H2A clustered histone 12 [Source:HGNC Symbol;Acc:HGNC:13671]2194.8960.1105Yes
18H2AWH2A.W histone [Source:HGNC Symbol;Acc:HGNC:20507]2254.8760.1172Yes
19RBL1RB transcriptional corepressor like 1 [Source:HGNC Symbol;Acc:HGNC:9893]2454.8130.1163Yes
20H4C11H4 clustered histone 11 [Source:HGNC Symbol;Acc:HGNC:4785]2484.8030.1246Yes
21ATF7IPactivating transcription factor 7 interacting protein [Source:HGNC Symbol;Acc:HGNC:20092]2524.7780.1323Yes
22JADE2jade family PHD finger 2 [Source:HGNC Symbol;Acc:HGNC:22984]2634.6940.1360Yes
23TINF2TERF1 interacting nuclear factor 2 [Source:HGNC Symbol;Acc:HGNC:11824]2694.6500.1423Yes
24H2BC5H2B clustered histone 5 [Source:HGNC Symbol;Acc:HGNC:4747]2794.6110.1464Yes
25H2AC17H2A clustered histone 17 [Source:HGNC Symbol;Acc:HGNC:4735]2884.5940.1510Yes
26RPA2replication protein A2 [Source:HGNC Symbol;Acc:HGNC:10290]3014.5360.1534Yes
27H2BC18H2B clustered histone 18 [Source:HGNC Symbol;Acc:HGNC:24700]3094.5150.1584Yes
28LATS1large tumor suppressor kinase 1 [Source:HGNC Symbol;Acc:HGNC:6514]3394.3820.1512Yes
29H2AC13H2A clustered histone 13 [Source:HGNC Symbol;Acc:HGNC:4725]3424.3680.1586Yes
30CDKN2B-AS1CDKN2B antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:34341]3584.3200.1589Yes
31BAHD1bromo adjacent homology domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29153]3694.2800.1619Yes
32RIOX1ribosomal oxygenase 1 [Source:HGNC Symbol;Acc:HGNC:20968]3744.2570.1680Yes
33HMGB2high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]3784.2340.1746Yes
34CHTF8chromosome transmission fidelity factor 8 [Source:HGNC Symbol;Acc:HGNC:24353]4014.1540.1708Yes
35H2BC15H2B clustered histone 15 [Source:HGNC Symbol;Acc:HGNC:4749]4084.1260.1756Yes
36H2BS1H2B.S histone 1 [Source:HGNC Symbol;Acc:HGNC:4762]4104.1220.1830Yes
37CTCFCCCTC-binding factor [Source:HGNC Symbol;Acc:HGNC:13723]4164.1060.1883Yes
38ZFPM1"zinc finger protein, FOG family member 1 [Source:HGNC Symbol;Acc:HGNC:19762]"4284.0560.1903Yes
39H2BU1H2B.U histone 1 [Source:HGNC Symbol;Acc:HGNC:20514]4563.9820.1834Yes
40NAA50"N-alpha-acetyltransferase 50, NatE catalytic subunit [Source:HGNC Symbol;Acc:HGNC:29533]"4753.9350.1814Yes
41DDB2damage specific DNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2718]4763.9340.1890Yes
42H4C13H4 clustered histone 13 [Source:HGNC Symbol;Acc:HGNC:4791]4773.9320.1967Yes
43DAXXdeath domain associated protein [Source:HGNC Symbol;Acc:HGNC:2681]4963.8950.1945Yes
44H2BC6H2B clustered histone 6 [Source:HGNC Symbol;Acc:HGNC:4753]5173.8320.1912Yes
45HIRAhistone cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:4916]5183.8310.1986Yes
46NUF2NUF2 component of NDC80 kinetochore complex [Source:HGNC Symbol;Acc:HGNC:14621]5193.8260.2061Yes
47H3C13H3 clustered histone 13 [Source:HGNC Symbol;Acc:HGNC:25311]5303.8010.2080Yes
48MCMBPminichromosome maintenance complex binding protein [Source:HGNC Symbol;Acc:HGNC:25782]5383.7840.2116Yes
49BRCA2BRCA2 DNA repair associated [Source:HGNC Symbol;Acc:HGNC:1101]5393.7780.2190Yes
50FBXO5F-box protein 5 [Source:HGNC Symbol;Acc:HGNC:13584]5613.7350.2149Yes
51H2BC13H2B clustered histone 13 [Source:HGNC Symbol;Acc:HGNC:4748]5633.7250.2216Yes
52BUB3BUB3 mitotic checkpoint protein [Source:HGNC Symbol;Acc:HGNC:1151]5803.6910.2201Yes
53H2BC11H2B clustered histone 11 [Source:HGNC Symbol;Acc:HGNC:4761]5823.6880.2267Yes
54PRKCQprotein kinase C theta [Source:HGNC Symbol;Acc:HGNC:9410]5883.6700.2312Yes
55HAT1histone acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:4821]5903.6690.2378Yes
56HLCSholocarboxylase synthetase [Source:HGNC Symbol;Acc:HGNC:4976]5913.6690.2449Yes
57BMI1"BMI1 proto-oncogene, polycomb ring finger [Source:HGNC Symbol;Acc:HGNC:1066]"5943.6570.2509Yes
58ACTR6actin related protein 6 [Source:HGNC Symbol;Acc:HGNC:24025]5953.6570.2580Yes
59SHPRHSNF2 histone linker PHD RING helicase [Source:HGNC Symbol;Acc:HGNC:19336]6033.6480.2613Yes
60RFWD3ring finger and WD repeat domain 3 [Source:HGNC Symbol;Acc:HGNC:25539]6153.6270.2624Yes
61APCAPC regulator of WNT signaling pathway [Source:HGNC Symbol;Acc:HGNC:583]6173.6220.2689Yes
62H2AC21H2A clustered histone 21 [Source:HGNC Symbol;Acc:HGNC:20508]6203.6200.2749Yes
63CHAF1Bchromatin assembly factor 1 subunit B [Source:HGNC Symbol;Acc:HGNC:1911]6223.6170.2814Yes
64RAB11A"RAB11A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9760]"6293.6060.2851Yes
65SMC4structural maintenance of chromosomes 4 [Source:HGNC Symbol;Acc:HGNC:14013]6353.5900.2894Yes
66MLLT6"MLLT6, PHD finger containing [Source:HGNC Symbol;Acc:HGNC:7138]"6623.5490.2823Yes
67H1-4"H1.4 linker histone, cluster member [Source:HGNC Symbol;Acc:HGNC:4718]"6823.5140.2789Yes
68PCGF1polycomb group ring finger 1 [Source:HGNC Symbol;Acc:HGNC:17615]6883.5040.2830Yes
69MSL3P1MSL complex subunit 3 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:17837]6943.4940.2871Yes
70KMT2Alysine methyltransferase 2A [Source:HGNC Symbol;Acc:HGNC:7132]6973.4900.2928Yes
71H1-10H1.10 linker histone [Source:HGNC Symbol;Acc:HGNC:4722]7023.4810.2974Yes
72H2BC4H2B clustered histone 4 [Source:HGNC Symbol;Acc:HGNC:4757]7303.4330.2895Yes
73MCM4minichromosome maintenance complex component 4 [Source:HGNC Symbol;Acc:HGNC:6947]7403.4190.2913Yes
74HLTFhelicase like transcription factor [Source:HGNC Symbol;Acc:HGNC:11099]7473.3990.2946Yes
75EEDembryonic ectoderm development [Source:HGNC Symbol;Acc:HGNC:3188]7533.3920.2985Yes
76PRDM4PR/SET domain 4 [Source:HGNC Symbol;Acc:HGNC:9348]7773.3450.2926Yes
77C6orf89chromosome 6 open reading frame 89 [Source:HGNC Symbol;Acc:HGNC:21114]7893.3290.2932Yes
78RECQLRecQ like helicase [Source:HGNC Symbol;Acc:HGNC:9948]7963.3200.2964Yes
79RYBPRING1 and YY1 binding protein [Source:HGNC Symbol;Acc:HGNC:10480]8033.3090.2996Yes
80LIN54lin-54 DREAM MuvB core complex component [Source:HGNC Symbol;Acc:HGNC:25397]8053.3090.3055Yes
81TRIM37tripartite motif containing 37 [Source:HGNC Symbol;Acc:HGNC:7523]8063.3070.3119Yes
82CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]848-3.3040.2962No
83LRRK2leucine rich repeat kinase 2 [Source:HGNC Symbol;Acc:HGNC:18618]866-3.3260.2935No
84NFE2"nuclear factor, erythroid 2 [Source:HGNC Symbol;Acc:HGNC:7780]"884-3.3480.2908No
85KAT2Alysine acetyltransferase 2A [Source:HGNC Symbol;Acc:HGNC:4201]1001-3.5390.2352No
86DUSP1dual specificity phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:3064]1038-3.6030.2228No
87KDM6Blysine demethylase 6B [Source:HGNC Symbol;Acc:HGNC:29012]1075-3.6470.2104No
88ZMIZ1zinc finger MIZ-type containing 1 [Source:HGNC Symbol;Acc:HGNC:16493]1083-3.6660.2138No
89JMJD1Cjumonji domain containing 1C [Source:HGNC Symbol;Acc:HGNC:12313]1125-3.7260.1989No
90PADI2peptidyl arginine deiminase 2 [Source:HGNC Symbol;Acc:HGNC:18341]1128-3.7280.2051No
91L3MBTL4L3MBTL histone methyl-lysine binding protein 4 [Source:HGNC Symbol;Acc:HGNC:26677]1140-3.7530.2064No
92NPM3nucleophosmin/nucleoplasmin 3 [Source:HGNC Symbol;Acc:HGNC:7931]1141-3.7530.2137No
93FAM172BP"family with sequence similarity 172 member B, pseudogene [Source:HGNC Symbol;Acc:HGNC:34336]"1168-3.8040.2071No
94CHMP1Bcharged multivesicular body protein 1B [Source:HGNC Symbol;Acc:HGNC:24287]1191-3.8420.2027No
95JARID2jumonji and AT-rich interaction domain containing 2 [Source:HGNC Symbol;Acc:HGNC:6196]1225-3.9040.1925No
96HORMAD1HORMA domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25245]1279-4.0310.1718No
97JADE3jade family PHD finger 3 [Source:HGNC Symbol;Acc:HGNC:22982]1285-4.0450.1769No
98SMARCA1"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 [Source:HGNC Symbol;Acc:HGNC:11097]"1350-4.1930.1506No
99APEX1apurinic/apyrimidinic endodeoxyribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:587]1364-4.2340.1518No
100PPM1F"protein phosphatase, Mg2+/Mn2+ dependent 1F [Source:HGNC Symbol;Acc:HGNC:19388]"1388-4.2820.1477No
101SMARCD3"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 [Source:HGNC Symbol;Acc:HGNC:11108]"1419-4.3620.1400No
102TACC3transforming acidic coiled-coil containing protein 3 [Source:HGNC Symbol;Acc:HGNC:11524]1434-4.3910.1410No
103TOP1MTDNA topoisomerase I mitochondrial [Source:HGNC Symbol;Acc:HGNC:29787]1521-4.6440.1036No
104JDP2Jun dimerization protein 2 [Source:HGNC Symbol;Acc:HGNC:17546]1611-4.9270.0652No
105PRKCAprotein kinase C alpha [Source:HGNC Symbol;Acc:HGNC:9393]1614-4.9330.0737No
106PADI4peptidyl arginine deiminase 4 [Source:HGNC Symbol;Acc:HGNC:18368]1622-4.9500.0796No
107KDM5Blysine demethylase 5B [Source:HGNC Symbol;Acc:HGNC:18039]1743-5.4240.0254No
108LEF1lymphoid enhancer binding factor 1 [Source:HGNC Symbol;Acc:HGNC:6551]1766-5.5570.0243No
109KANSL1LKAT8 regulatory NSL complex subunit 1 like [Source:HGNC Symbol;Acc:HGNC:26310]1784-5.6580.0262No
110AXIN2axin 2 [Source:HGNC Symbol;Acc:HGNC:904]1852-6.1850.0020No
111HDAC9histone deacetylase 9 [Source:HGNC Symbol;Acc:HGNC:14065]1889-6.614-0.0045No
112SETD7"SET domain containing 7, histone lysine methyltransferase [Source:HGNC Symbol;Acc:HGNC:30412]"1924-7.186-0.0089No
113SNAI1snail family transcriptional repressor 1 [Source:HGNC Symbol;Acc:HGNC:11128]1925-7.1920.0051No
114VEGFAvascular endothelial growth factor A [Source:HGNC Symbol;Acc:HGNC:12680]1959-9.0420.0049No
Table: GSEA details [plain text format]



Fig 2: GOBP_CHROMOSOME_ORGANIZATION: Random ES distribution   
Gene set null distribution of ES for GOBP_CHROMOSOME_ORGANIZATION