ChromHMM Report

Input Directory: /afs/bx.psu.edu/depot/data/hardison_lab/new/work/histones/chromHMM/ESE14/output/
Output Directory: /afs/bx.psu.edu/depot/data/hardison_lab/new/work/histones/chromHMM/ESE14/states/
Number of States: 9
Assembly: mm9
Full ChromHMM command: LearnModel /afs/bx.psu.edu/depot/data/hardison_lab/new/work/histones/chromHMM/ESE14/output/ /afs/bx.psu.edu/depot/data/hardison_lab/new/work/histones/chromHMM/ESE14/states/ 9 mm9

Model Parameters


  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • ES_9 Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • ES_9 Browser Custom Track Dense File
  • ES_9 Browser Custom Track Expanded File

    State Enrichments

    ES_9 Enrichments