Analyze this sequence to predict genes.
RepeatMasker has already been run on the sequence, and repeats have been
"soft masked" (i.e., replaced by lower-case letters).
Analyze the sequence with
GenScan and
blastn, searching both the
NR and EST databases.
Also, use BLAT at the
UCSC Genome Browser
and see what you can learn.
Write (in a plain text file) a summary of your gene predictions, no more than a page, describing the evidence for them. Explain what you learned about which tissues express the gene (or genes). Before class on Tuesday, email this report to me.
I'll be available most of Friday to answer questions, at webb@bx.psu.edu or in 506B Wartik Lab.