Papers related to potential term projects for Bioinformatics I
Machine learning techniques
Predicting the in vivo signature of human gene regulatory sequences
GPCRpred: and SVM-based method for prediction of families and
subfamilies of G-protein coupled receptors
Distinguishing regulatory DNA from neutral sites
Into the heart of darkness: large-scale clustering of human non-coding
DNA
Genome alignments
Human-mouse alignments with BLASTZ
LAGAN and Multi-LAGAN: Efficient tools for large-scale multiple
alignment of genomic DNA
MCALIGN: Stochasitc alignment of noncoding DNA sequences based on
an evolutionary model of sequence evolution
Predicting expression patterns
Identification of regulatory regions which confer muscle-specific
gene expression
oPOSSUM: identification of over-represented transcription factor binding
sites in co-expressed genes
Bioinformatic analysis of protein families
PRED-GPCR: GPCR recognition and family classification server
ConPredII: consensus prediction method for obtaining transmembrane
topology models with high reliability
Identification of regulatory regions which confer muscle-specific
gene expression
Prediction of regulatory sites
Evaluation of regulatory potential and conservation scores for detecting
cis-regulatory modules in aligned mammalian genome sequences
Human variation
On the number of new world founders: A population genetic portrait of
the peopling of the americas