Drawing a phylogenetic tree

In the Genome Diversity section, click on the Phylogenetic Tree tool. Again our dataset should already be selected. We will use the defaults for most of the options. For minimum coverage we will use the eight we were looking at in the coverage distribution. We can be fairly stringent with this cutoff as this tool looks at the SNPs pairwise. For the Data Source option we will select estimated genotype, as a better option to use with low coverage data. Then click the Execute button.