Part 3: Running new predictions of coding SNPs likely to be detrimental
Overview:
Augment the input dataset (from Part 1) to add a new column containing
both the variant and reference alleles, by running the shared workflow
"Prep pgSnp file to run SIFT".
Run the SIFT tool, keeping the original allele column as a comment, and
requesting the gene name, OMIM disease, etc. in the output.
Filter the results to select rows containing the word "DAMAGING".