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Paul Medvedev

Computer Science and Engineering - Biochemistry and Molecular Biology, Pennsylvania State University

Personal website

Interests

Education

  • Ph.D. in Computer Science, 2010

    University of Toronto

  • M.Sc. in Computer Science, 2004

    University of Southern Denmark at Odense

  • B.S. in Computer Science, 2002

    University of California, Los Angeles

Biography

Publications

M Cechova, R Vegesna, M Tomaszkiewicz, RS Harris, D Chen, S Rangavittal, P Medvedev, KD Makova. Dynamic evolution of great ape Y chromosomes. P NATL ACAD SCI USA, 2020.

Sex chromosome DOI

R Vegesna, M Tomaszkiewicz, OA Ryder, R Campos-Sánchez, P Medvedev, M DeGiorgio, KD Makova. Ampliconic genes on the great ape Y chromosomes: Rapid evolution of copy number but conservation of expression levels. GENOME BIOL EVOL, 2020.

PDF Sex chromosome DOI

R Vegesna, M Tomaszkiewicz, P Medvedev, KD Makova. Dosage regulation, and variation in gene expression and copy number of human Y chromosome ampliconic genes. PLOS GENET, 2019.

Sex chromosome DOI

S Rangavittal, N Stopa, M Tomaszkiewicz, K Sahlin, KD Makova, P Medvedev. DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies. BMC GENOMICS, 2019.

Sex chromosome DOI

K Sahlin, M Tomaszkiewicz, KD Makova, P Medvedev. Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon. NAT COMMUN, 2018.

Sex chromosome DOI

S Warris, E Schijlen, H van de Geest, R Vegesna, T Hesselink, B te Lintel Hekkert, G Sanchez Perez, P Medvedev, KD Makova, D de Ridder. Correcting palindromes in long reads after whole-genome amplification. BMC GENOMICS, 2018.

Sex chromosome DOI

S Rangavittal, RS Harris, M Cechova, M Tomaszkiewicz, R Chikhi, KD Makova, P Medvedev. RecoverY: k-mer-based read classification for Y-chromosome-specific sequencing and assembly. BIOINFORMATICS, 2018.

Sex chromosome DOI

M Tomaszkiewicz, P Medvedev, KD Makova. Y and W Chromosome Assemblies: Approaches and Discoveries. TRENDS GENET, 2017.

Sex chromosome DOI

M Tomaszkiewicz, S Rangavittal, M Cechova, R Campos-Sánchez, HW Fescemyer, RS Harris, D Ye, PCM O’Brien, R Chikhi, OA Ryder, MA Ferguson-Smith, P Medvedev, KD Makova. A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y. GENOME RES, 2016.

Sex chromosome DOI

A Fungtammasan, G Ananda, SE Hile, MS-W Su, C Sun, RS Harris, P Medvedev, KA Eckert, KD Makova. Accurate typing of short tandem repeats from genome-wide sequencing data and its applications. GENOME RES, 2015.

Microsatellite DOI

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