SOFTWARE AND RESOURCES

GALAXY
We contribute our tools to GALAXY, a free software for genomic research

X inactivation
Genomic Environment Predicts Expression Patterns on the Human Inactive X Chromosome
Carrel L, Park C, Tyekucheva S, Dunn J, Chiaromonte F, Makova KD.
PLoS Genet 2(9): e151. doi:10.1371/journal.pgen.0020151
Online Supplemental materials

Indels
Human-specific indels identified in the non-coding non-repetitive (NCNR) portion of hg18
(Kvikstad et al submitted), according to methods described in (Kvikstad et al 2007)
Online Supplemental materials

Duplicate genes
Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes
Chungoo Park and Kateryna Makova.
Genome Biology 2009, 10:R10 (doi:10.1186/gb-2009-10-1-r10)
Duplicate genes from FASTA
Duplicate genes by TRIBE-MCL

X- and Y-added Region
Evolution and Survival on Eutherian Sex Chromosomes
Wilson MA and Makova KD.
PLoS Genet. 2009 Jul;5(7):e1000568. Epub 2009 Jul 17.
Unmasked FASTA files for XAR/YAR genes