| 35. | Tyekucheva, S., K. D. Makova, J. E. Karro, R. C. Hardison, W. Miller, and F. Chiaromonte. 2008. Human-macaque comparisons illuminate variation in neutral substitution rates. Genome Biology 9: R76. |
| 34. | Kvikstad, E.M., Makova K.D. Rapid evolution of genes on the human X-chromosome. Encyclopedia of Life Sciences (in press) |
| 33. | Kelkar, Y., S. Tyekucheva, F. Chiaromonte, and K. D. Makova. 2008. The genome-wide determinants of microsatellite evolution. Genome Research 18: 30-38. |
| 32. | Kvikstad, E. M., S. Tyekucheva, F. Chiaromonte, and K. D. Makova. 2007. A macaque's-eye view of human insertions and deletions: differences in mechanisms. PLoS Computational Biology 3: (9) e176, 1772-1782. |
| 31. | Blankenberg, D., J. Taylor, I. Schenk, J. He, Y. Zhang, M. Ghent, N. Veeraraghavan, I. Albert, W. Miller, K. D. Makova, R. C. Hardison, and A. Nekrutenko. 2007. A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly. Genome Research 17: 960-964. |
| 30. | Rhesus Macaque Genome Sequencing and Analysis Consortium (K. D. Makova - member). 2007. Evolutionary and Biomedical Insights from the Rhesus Macaque Genome. Science 316: 222-234. |
| 29. | Carrel, L., C. Park, S. Tyekucheva, J. Dunn, F. Chiaromonte, and K. D. Makova. 2006. Genomic environment predicts expression patterns on the human inactive X chromosome. PLoS Genet 2: (9) e151. |
| 28. | Goetting-Minesky, M. P., and K. D. Makova. 2006. Mammalian Male Mutation Bias: Impacts of Generation Time and Regional Variation in Substitution Rates. Journal of Molecular Evolution 63: 537-544. |
| 27. | Chung, W. Y., R. Albert, I. Albert, A. Nekrutenko, and K. D. Makova. 2006. Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network. BMC Bioinformatics 7: 46. |
| 26. | Taylor, J., S. Tyekucheva, M. Zody, F. Chiaromonte, and K. D. Makova. 2006. Strong and Weak Male Mutation Bias at Different Sites in the Primate Genomes: Insights from the Human-Chimpanzee Comparison. Molecular Biology and Evolution 23: 565-573. |
| 25. | Makova, K. D., and H. Norton. 2005. Worldwide polymorphism at the MC1R locus and normal pigmentation variation in humans. Peptides 10: 1901-1908. |
| 24. | The Chimpanzee Sequencing and Analysis Consortium (K. D. Makova - member). 2005. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437: 69-87. |
| 23. | Nekrutenko, A., S. Wadhawan, P. Goetting-Minesky, and K. D. Makova. 2005. Oscillating Evolution of a Mammalian Locus with Overlapping Reading Frames: An XLas/ALEX Relay. PloS Genetics 2: 197-204. |
| 22. | Makova, K.D., S. Yang, and F. Chiaromonte. 2004. Indels are male-biased too: a whole genome analysis in rodents. Genome Research 14: 567-573. |
| 21. | Miller, W., K. D. Makova, A. Nekrutenko, and R. Hardison. 2004. Comparitive Genomics. Annual Review of Genomics and Human Genetics 5: 15-56. |
| 20. | Rat Genome Sequencing Project Consortium (K. D. Makova - member). 2004. Evolution of the Mammalian Genome: sequence of the genome of the brown Norwegian Rat. Nature 428: 493-521. |
| 19. | International Chicken Genome Sequencing Consortium (K. D. Makova - member). 2004. Sequence and comparitive analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432: 695-716. |
| 18. | Makova, K.D., and W.-H. Li. 2003. Divergence in the spatial pattern of gene expression between human duplicate genes. Genome Research 13: 1638-45. |
| 17. | John, P. R., K. D. Makova, W.-H. Li, T. Jenkins, and M. Ramsay. 2003. DNA polymorphism and selection at the melanocortin-1 receptor gene in normally pigmented southern African individuals. Ann N Y Acad Sci 994: 299-306. |
| 16. | Li, W.-H. and K. D. Makova. 2003. Molecular Clocks. Encyclopedia of the Human Genome (Nature Publishing Group) |
| 15. | Li, W.-H. and K. D. Makova. 2003. Domain duplication and gene elongation. Encyclopedia of the Human Genome (Nature Publishing Group) |
| 14. | Li, W.-H., S. Yi, and K. D. Makova. 2002. Current Opinions in Genetics and Development. Male-driven evolution 12: 650-656. |
| 13. | Mu, J., J. Duan, K. D. Makova, D. A. Joy, C. Q. Huynh, O. H. Branch, W.-H. Li, and X. Su. 2002. Chromosome-wide SNPs reveal an ancient origin for Plasmodium falciparum. Nature 418: 323-326. |
| 12. | Makova, K.D., and W.-H. Li. 2002. Strong male-driven evolution of DNA sequences in humans and apes. Nature 416: 624-626. |
| 11. | Nekrutenko, A., K. D. Makova, and W.-H. Li. 2002. The KA/KS ratio test for assessing the protein-coding potential of genomic regions: An empirical and simulation study. Genome Research 12: 198-202. |
| 10. | Makova, K. D., M. Ramsay, T. Jenkins, and W.-H. Li. 2001. Human DNA sequence variation in a 6.6-kilobase region containing the melanocortin 1 receptor promoter. Genetics 158: 1253-1268. |
| 9. | Liu*, J.-C., K. D. Makova*, R. M. Adkins, S. Gibson, and W.-H. Li. 2001. Periods of rapid evolution of growth hormone in primates and emergence of species specificity of growth hormone receptor. * These authors contributed equally to this work. Molecular Biology and Evolution 18: 945-953. |
| 8. | Li, W.-H. and K. D. Makova. 2001. Molecular Clocks. Encyclopedia of Genetics (Academic Press) |
| 7. | Longmire, J. L., J. L. Roach, M. Maltbie, P. S. White, O. L. Tatum, K. D. Makova, and D.C. Hahn. 2001. Tetranucleotide microsatellite markers for the brown-headed cowbird (Molothrus ater). ournal of Avian Biology 32: 76-79. |
| 6. | Makova, K. D., A. Yu. Nekrutenko, and R. J. Baker. 2000. Evolution of Microsatellite Alleles in Four species of mice (genus Apodemus). Journal of Molecular Evolution 51: 166-172. |
| 5. | Nekrutenko, A., K. D. Makova, and R. J. Baker. 2000. Isolation of binary species-specific PCR-based markers and their value for systematic applications. Gene 249: 47-51. |
| 4. | Nekrutenko, A. Yu, K. D. Makova, R. K. Chesser, and R. J. Baker. 1999. Representational Difference Analysis to distinguish cryptic species. Molecular Ecology 8: 1235-1236. |
| 3. | Baker, R. J., K. D. Makova, and R. K. Chesser. 1999. Microsatellites indicate high frequency of multiple paternity in Apodemus (Rodentia). Molecular Ecology 8: 107-112. |
| 2. | Makova, K. D., J. C. Patton, R. K. Chesser, E. Yu. Krysanov, and R. J. Baker. 1998. Microsatellite markers in wood mouse and striped field mouse (genus Apodemus). Molecular Ecology 7: 247-248. |
| 1. | Makova, K. D., and J. C. Patton. 1998. Increased yield of tri- and tetranucleotide microsatellite markers from unenriched small-insert libraries. BioTechniques 24: 38-41. |