GALA: Genome Alignments and Annotations database
Query form, list of fields

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Not all fields are available in all data releases.
  1. Genes and Gene Predictions
    1. all genes
    2. name
    3. type
    4. evidence
    5. orientation
    6. other gene fields
      1. coding, noncoding gene, non-coding, not annotated
      2. exons, introns, intergenic
      3. number of exons
    7. product
    8. ontology
      1. biological process
      2. cellular component
      3. molecular function
    9. other annotation; category, term
    10. conserved domain
    11. genetic disorders
    12. alternate gene models
      1. gene model
      2. name
      3. other gene fields
        1. exons, introns, intergenic
        2. coding
        3. number of exons
  2. EST and mRNA
    1. all of track (tracks available vary with build)
    2. exons only
  3. Comparative Genomics
    1. Alignments
      1. all alignments
      2. species
      3. minimum length
      4. minimum percent identity
      5. maximum gap size
      6. maximum identity step
    2. Multiple alignments
    3. Blat alignments
    4. Regulatory Potential
      1. based on pairwise alignments
      2. based on multiple alignments
    5. Mouse Conservation score (only in earlier freezes)
  4. Variation and Repeats
    1. SNPs
      1. all SNPs
      2. SNP database
      3. allele
      4. frequency
      5. type
    2. HbVar: A Database of Human Hemoglobin Variants and Thalassemias
      Queries are done using the HbVar query page and the query can added to GALA's history page and results can be displayed using GALA.
    3. Repeats
      1. all repeats
      2. name
      3. class
      4. family
      5. divergence
      6. ancestral, lineage specific
  5. Expression and Regulation
    1. Transcription factor binding sites
      1. all transcription factor binding sites
      2. all binding sites conserved in human, mouse, and rat
      3. factor
      4. strand
      5. score
    2. Regulatory regions
      1. all regulatory regions
      2. name
    3. Functional promoters from Stanford
    4. Predicted promoters from Stanford
    5. Micro RNA
      1. all micro RNA
      2. name
    6. CpG islands
      1. all CpG islands
      2. name
    7. dbERGE II: A Database of Experimental Results on Gene Expression
      Queries are done using the dbERGE II query page and the query can added to GALA's history page and results can be displayed using GALA.
    8. tissue expressed in
    9. Microarray expression data from GNF
      1. tissue
      2. average difference value
  6. Mapping and Sequencing
    1. recombination rate
      1. source
      2. average, male, female
      3. rate
    2. GC percent
  7. Interval; chromosome, start point, stop point