A paper on ESPERR was published in Genome Research on 19 October 2006, and is available online
ESPERR 7 species RP Scores
These scores are currently available for the two most recent builds of human and of mouse.
They are avaailable in the UCSC genome browser as "Reg Potential 7 species" in the "Expression and Regulation" track group
Raw scores are in UCSC wiggle track format, and are available both as full range log odds scores (*.scores.bz2) and truncated so that all negative scores are set to zero (*.scores.truncated.bz2).
Code is available via anonymous svn. It can be checked out by:
svn co http://coltrane.bx.psu.edu/svn/esperr/trunk/ esperr-trunk
Turnkey templateA template Makefile that can be easily modified to run the ESPERR procedure on arbitrary training data is available in svn under the training_template directory. It requires that the software listed below be built and installed in some location.
The python code is in the directory
esperr-mainand can be built with the standard tools (see the README).
This code requires:
The bx-python libraries used by this software are availabe here:http://bitbucket.org/james_taylor/bx-python/