Thesis

(University of Melbourne nominee for Australasian distinguished doctoral dissertation award- 2007 in Computer Science)

Journal Papers

Arun S. Konagurthu and Arthur M. Lesk
Single and Multiple Input Modules in Regulatory Networks
Proteins: Structure, Function, Bioinformatics (2008, in press)

[Advance online Access]

Arun S. Konagurthu, Peter J. Stuckey, Arthur M. Lesk.
Structural search and retrieval using tableau representation of protein folding patterns
Bioinformatics 24: 645-651 (2008) doi: 10.1093/bioinformatics/btm641
Preprint: [PDF]
[Advance online Access]

Arun S. Konagurthu, James Whisstock , Peter J. Stuckey, Arthur M. Lesk.
MUSTANG: A Multiple Structural Alignment Algorithm.
Volume 64, issue 3, 559--574 (2006),
Proteins: Structure, Function, Bioinformatics
Download: [PDF] [postscript](gzipped) [BiBTeX]

Arun S. Konagurthu, Peter J. Stuckey.
Optimal Sum-of-Pairs Multiple Sequence Alignment using Incremental Carrillo-and-Lipman bounds.
Volume 13, issue 3, 668--685 (2006),
Journal of Computational Biology.
Download: [PDF] [postscript](gzipped) [BiBTeX]

Arun S. Konagurthu, James Whisstock , Peter J. Stuckey.
Progressive multiple alignment using sequence triplet optimizations and three-residue exchange costs.
Volume 2, issue 4, 719--745 (2004),
Journal of Bioinformatics and Computational Biology,

New Millennium India Technological Leadership Initiative(NMITLI)-BioSuite Team.
BioSuite: A comprehensive bioinformatics software package (A unique industry–academia collaboration)
Volume 92, issue 1, 29--38 (2007),
Current Science
Download: PDF

Manuscripts under review

Erdös Number (collaborative distance) = 4
(Daniel J. Kleitman)->(Ruth Nussinov)->(Arthur M. Lesk)->(Arun S. Konagurthu)